Gene
RNA
| Item | Value |
|---|---|
| gene id | G236140 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 22974684 ~ 22975472 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: protein LDOC1-like, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU269891 | True | 789 | lncRNA | 0.46 | 1 | 22974684 | 22975472 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110514282 | LOC106581183 | coding | upstream | 80908 | 22869740 ~ 22893776 (+) |
| LOC110514168 | LOC106581241 | coding | upstream | 356601 | 22612036 ~ 22618089 (+) |
| LOC110514114 | can7 | coding | upstream | 399574 | 22557122 ~ 22575110 (+) |
| LOC110514095 | LOC106581260 | coding | upstream | 430585 | 22513124 ~ 22544099 (+) |
| LOC118947118 | NA | coding | upstream | 488168 | 22482472 ~ 22488203 (+) |
| LOC110514335 | LOC106581155 | coding | downstream | 143911 | 23119383 ~ 23133074 (+) |
| smarcc1a | LOC106605342 | coding | downstream | 234946 | 23210418 ~ 23227568 (+) |
| LOC110514420 | LOC106581064 | coding | downstream | 260790 | 23236262 ~ 23290996 (+) |
| elp6 | LOC106581052 | coding | downstream | 327300 | 23302772 ~ 23306081 (+) |
| LOC110514448 | LOC106581016 | coding | downstream | 330760 | 23306232 ~ 23342019 (+) |
| G236121 | NA | non-coding | upstream | 18483 | 22955990 ~ 22956201 (+) |
| G236118 | NA | non-coding | upstream | 23076 | 22951314 ~ 22951608 (+) |
| G235733 | NA | non-coding | upstream | 50141 | 22924142 ~ 22924543 (+) |
| G235685 | NA | non-coding | upstream | 70009 | 22903742 ~ 22904675 (+) |
| G235678 | NA | non-coding | upstream | 77980 | 22895765 ~ 22896704 (+) |
| G236168 | NA | non-coding | downstream | 18551 | 22994023 ~ 22994248 (+) |
| G236181 | NA | non-coding | downstream | 28097 | 23003569 ~ 23003948 (+) |
| G236234 | LOC106581161 | non-coding | downstream | 60582 | 23036054 ~ 23040059 (+) |
| G236235 | LOC106581161 | non-coding | downstream | 64785 | 23040257 ~ 23042307 (+) |
| G236249 | NA | non-coding | downstream | 89685 | 23065157 ~ 23065434 (+) |
| G235571 | NA | other | upstream | 275850 | 22672736 ~ 22698834 (+) |
| G235569 | NA | other | upstream | 293956 | 22673525 ~ 22685509 (+) |
| LOC110514034 | NA | other | upstream | 501767 | 22460524 ~ 22472917 (+) |
| G235426 | LOC106581355 | other | upstream | 669778 | 22303641 ~ 22304906 (+) |
| LOC110503910 | LOC106580557 | other | upstream | 906604 | 22057484 ~ 22068080 (+) |
| G236271 | LOC106581124 | other | downstream | 173680 | 23144516 ~ 23191853 (+) |
| G236301 | NA | other | downstream | 223380 | 23198852 ~ 23199075 (+) |
| G236370 | LOC106581434 | other | downstream | 371408 | 23346880 ~ 23349378 (+) |
| G236372 | LOC106581434 | other | downstream | 374619 | 23350091 ~ 23350815 (+) |
| LOC110514613 | hormad1 | other | downstream | 817325 | 23780400 ~ 23795199 (+) |
