G236254


Basic Information

Item Value
gene id G236254
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23071480 ~ 23138925 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU270009
ggcctcttggctgcatttctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctttgagactatcacagtgcaggtacatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaaggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtaggtctctTCGTCAGTGGAGAAATAGAAGACGAGAAGTGAGGGAAATCAATTCAAAAGCAGGGTTGAAACTACCACATGTCAACTCATTTCAGGCTTAATCCTAATGCATGAAACTTGAGGTAAATACATCGATTTGAAGTTAGGATTCGGCCTTCCGTGAATCAACTGTGTTGAAATGTAATTGACCCATTGAGTTGGTTAGAGGGAGCATGTGTCCCAAAACCTGTTTCAGCATGTGCATTGAGGATTTTCACCATTTTGAATTAGTCAAATGGGTAGGACTTGcaatgggttaaggaaggatcacagtAGGTCAGTAGGAGGATTCAGCCAATTAATTACCTGTATACACCTGAGGAAACATTCCATAattgcaggtggcagtaaatctaTCTGTTCAAACTATACACACTCCAGCAAAGTAGGTAATGGTATGCACCTTTTCAGTTTATTTTGGTACTGCCAATACACtcgtagaagaagaagaaatggaCAACTTTAAAATGGGGACagccctcaatggtgctgcccatgctcTCACAGAAGTGGCCATTGCAAAGATAGGGGATGAGCTCTCTAGTACATCTCTATGAATTTACCCCAATTCTAATCCATCATATACCCACCAAGCACTGGTTGAAGCAGCCCAGGCGAATGATGTCCCTCCATCCCGTGGCACTGGAAGGTGACAGAGTCCCTAGCCGCTATGGAAAGATCACAgcacacctgccaggtggattAGGAGTCATTCATACAATAGCCTACAGGATTTATATTATGTATCCTTTATTTAGGTGATCCCATTGGTTCTGAAATAGTACTGCTACAGTAACTACACAGTAGCAGTGTGGCAATTATAGTAGTACTTTAGTACTGTGTTAGTAGTACTCTTTGGTTGCATTGTGCTTTTCATGTACTAGTACTTTAGTAGAACTGAGTTGTGAGTAGTTTATTGTAAACATATTTGCTCAGCCTACTCACTGAGGGTTACTGTTGCCGTTGTTCTTCAGGGAGTTTCCGATGAGAATCTCTGCCGCGTCCTGCCTCCAGGGGCAGCAGTCCTCTCTGTTAGTGACGGTAATGGAGGTGACTTTGTGAACAGCCAGCAGGTACACCCTCCACCAGGGGTCGCTCTGAAGCTGGGTGTGGGCACAGGAGCCAGAGAGGCACTCTGCATCCAGGCGACCATCGATGGCGTTCTCGGCATGGGTCAGACGGCTTAGCTTGGACAACTGGGTCACTCTTCCCATCATTGCCAAGTTGCCTTCTTTCAAACAAGAGGGATGGGGTTTGCTCAGAAAAATTACAAGCCTCTGGTTAAGAATTTCTGATTTCTGGTCCCAATTTTAGCCTGGAGGGTACTGTATCATTGGATGTAGGAGTAGCAGATCTTTCCGAATGGCAAGTCTTCTGAGGGATCTCAGAAGATCCCACAGCCAGGCCAGGTTTAGGTTTGGAGCTGTAACAGCTGTCTCAGTGACAGTTGAAGGCAGGGCTGGAAAAAGGAGGAGAGGcacagggagaaagggagtggagtaaaa

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU270009 True 2171 lncRNA 0.35 2 23071480 23138925

Neighbor

gene id symbol gene type direction distance location
LOC110514282 LOC106581183 coding upstream 177704 22869740 ~ 22893776 (+)
LOC110514168 LOC106581241 coding upstream 453397 22612036 ~ 22618089 (+)
LOC110514114 can7 coding upstream 496370 22557122 ~ 22575110 (+)
LOC110514095 LOC106581260 coding upstream 527381 22513124 ~ 22544099 (+)
LOC118947118 NA coding upstream 584964 22482472 ~ 22488203 (+)
smarcc1a LOC106605342 coding downstream 71493 23210418 ~ 23227568 (+)
LOC110514420 LOC106581064 coding downstream 97337 23236262 ~ 23290996 (+)
elp6 LOC106581052 coding downstream 163847 23302772 ~ 23306081 (+)
LOC110514448 LOC106581016 coding downstream 167307 23306232 ~ 23342019 (+)
LOC110514472 LOC106581037 coding downstream 230079 23369004 ~ 23374440 (+)
G236249 NA non-coding upstream 6046 23065157 ~ 23065434 (+)
G236235 LOC106581161 non-coding upstream 29173 23040257 ~ 23042307 (+)
G236234 LOC106581161 non-coding upstream 31421 23036054 ~ 23040059 (+)
G236181 NA non-coding upstream 67532 23003569 ~ 23003948 (+)
G236168 NA non-coding upstream 77232 22994023 ~ 22994248 (+)
G236271 LOC106581124 non-coding downstream 5591 23144516 ~ 23191853 (+)
G236296 NA non-coding downstream 53911 23192836 ~ 23193447 (+)
G236298 NA non-coding downstream 55031 23193956 ~ 23194256 (+)
G236300 NA non-coding downstream 59207 23198132 ~ 23198366 (+)
G236302 NA non-coding downstream 60959 23199884 ~ 23200135 (+)
G235571 NA other upstream 372646 22672736 ~ 22698834 (+)
G235569 NA other upstream 390752 22673525 ~ 22685509 (+)
LOC110514034 NA other upstream 598563 22460524 ~ 22472917 (+)
G235426 LOC106581355 other upstream 766574 22303641 ~ 22304906 (+)
LOC110503910 LOC106580557 other upstream 1003400 22057484 ~ 22068080 (+)
G236301 NA other downstream 59927 23198852 ~ 23199075 (+)
G236370 LOC106581434 other downstream 207955 23346880 ~ 23349378 (+)
G236372 LOC106581434 other downstream 211166 23350091 ~ 23350815 (+)
LOC110514613 hormad1 other downstream 653872 23780400 ~ 23795199 (+)

Expression


Co-expression Network