G237366 (LOC106580947)


Basic Information

Item Value
gene id G237366
gene name LOC106580947
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23685154 ~ 23686730 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU271246
GTCTGGAAGGCAAGCAGCTCGATGTCCTCTCCCCCTGAGTTGGCTGAGCTGTTGTACTGAGTCAGAGCACTGCTGAACTCCTGGTCCCCCTTCATCTCCTCCACAGACTTCACATCTATCCTGTCGGTTGACTGTGGCGACGGGCGGACCCTTGACTTCTCTGtacttctctcttcctctctcttgggTTTCTCGCTCTCCTCTTTTCCCTCGTCTTCCTTTTCCTTGCTCAGTTTAGGGACATTCACCTTCTGCTTGCTCTCCACCACAGCTTTGGACAGTAGCTCAAACACATTGTTAAGGTGGGTGTA
>TU271247
TATTATCGCTCAGGTAGGTCTGGATGGTCTATAGTAGATTAAATCTTTGTTTGTaaactacctttttatttgtttttatactACTTTTAATACGAAGCTTTGTATTCTCCTTTTTTGGTTGCTTTGTAAACGCGTCTGACCGCTAGGTACTGTAAGGATGTTGTGGGTGGTCTTACATGGGTGTACTGAGGAAGATGAGCGAGTCCCACTGGGGGACGTACTTCATTTGACCCTTCAGGTGGAGGGGCTTCTTGGGAGGTTCCCTCATATCCTCAAAGATAGTTTCACTGCACTTTCCTGGGGATGACGAAGAGCAGGGTGGGGTCATCCACAGACATAGAACGTGGAAACATTGGTTTAAATTTAGAATTGTCGTCTGTGCCATATTGTCACCAACAATTCCAAGACCATTTACACTCTAGTTATTCAAAATGGTATAGTTAATACTTCATTCAAAATAGACAGGGCAATCACTGATTCTGGCATTGTGTTGGATGTCTGTACCCCTTTCAAATGTAGGAGAACAAAGCTATGTAGCATGTAAGCTTATCTTGGTGAGCTGGACAGGTGGGAAGATGTGTTAAGGGCGAGGAAGAAGGGGTTCTCACCGGTGACAGTCTGGAAGGCAAGCAGCTCGATGTCCTCTCCCCCTGAGTTGGCTGAGCTGTTGTACTGAGTCAGAGCACTGCTGAACTCCTGGTCCCCCTTCATCTCCTCCACAGACTTCACATCTATCCTGTCGGTTGACTGTGGCGACGGGCGGACCCTTGACTTCTCTGtacttctctcttcctctctcttgggTTTCTCGCTCTCCTCTTTTCCCTCGTCTTCCTTTTCCTTGCTCAGTTTAGGGACATTCACCTTCTGCTTGCTCTCCACCACAGCTTTGGACAGTAGCTCAAACACATTGTTAAGGTGGGTGTA

Function

NR:

description
soluble guanylate cyclase gcy-31-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU271246 False 311 lncRNA 0.38 2 23685154 23686114
TU271247 True 927 lncRNA 0.38 2 23685154 23686730

Neighbor

gene id symbol gene type direction distance location
LOC110514498 LOC106580978 coding downstream 121663 23406253 ~ 23563491 (-)
LOC110503934 LOC106581009 coding downstream 316263 23342123 ~ 23368891 (-)
LOC110514368 LOC106581124 coding downstream 488811 23172610 ~ 23196343 (-)
LOC110514348 LOC106581121 coding downstream 520770 23144516 ~ 23164384 (-)
LOC118944658 LOC100136303 coding downstream 542188 23140834 ~ 23142966 (-)
LOC110514548 LOC106580919 coding upstream 23274 23710004 ~ 23713322 (-)
LOC110514538 tmod4 coding upstream 32659 23719389 ~ 23729898 (-)
LOC110514588 LOC106580904 coding upstream 81369 23768099 ~ 23770876 (-)
LOC110514600 ensa coding upstream 84781 23771511 ~ 23780158 (-)
LOC100136261 cats coding upstream 145672 23832402 ~ 23840512 (-)
G237162 NA non-coding downstream 298751 23379046 ~ 23386403 (-)
G237114 NA non-coding downstream 390831 23294120 ~ 23294323 (-)
G237086 NA non-coding downstream 394172 23289532 ~ 23290982 (-)
G237108 NA non-coding downstream 404964 23266069 ~ 23280190 (-)
G237092 NA non-coding downstream 449212 23235738 ~ 23235942 (-)
G237396 NA non-coding upstream 62824 23749554 ~ 23749821 (-)
G237457 NA non-coding upstream 180542 23867272 ~ 23867534 (-)
G237462 NA non-coding upstream 184940 23871670 ~ 23871871 (-)
G237463 NA non-coding upstream 185531 23872261 ~ 23872770 (-)
G237464 NA non-coding upstream 186586 23873316 ~ 23873537 (-)
G237047 NA other downstream 496123 23157109 ~ 23189031 (-)
G235881 NA other downstream 1110165 22573833 ~ 22574989 (-)
LOC118946878 NA other downstream 1929653 21744425 ~ 21755710 (-)
G235092 LOC100194668 other downstream 1941743 21738845 ~ 21743411 (-)
G234621 NA other downstream 2186322 21498408 ~ 21498832 (-)
G237657 LOC106605316 other upstream 493826 24180556 ~ 24183964 (-)
G237832 NA other upstream 834489 24521219 ~ 24521544 (-)
LOC110515154 LOC106605289 other upstream 1082832 24767049 ~ 24799511 (-)
LOC110515208 LOC106581894 other upstream 1249786 24936516 ~ 25052970 (-)

Expression


Co-expression Network