G236549 (LOC106580904)


Basic Information

Item Value
gene id G236549
gene name LOC106580904
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23765855 ~ 23770162 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU270342
CTCAGAGTCTCGGCATTTGAACTTTATATTTATTGTGGCATAGTGTGATataagtataatataatataattccAAATGCAAGAAACCCCCAAAATTATGGCCCTCACCAATTTCAACTGCCCTAAGACTTCCACACACGTCAGCAGAACTTGGCTAGTTGAACTGAACGAATGTGCTCGCACACACCCATAAACCTTTGCTAGAAAAACGAAACGTGGCAACACGGTTTGCCCATCTTGAGACGCCATAGCATGCAtgcataaatatatatatcccaaaaatatgggggattggaaattatgcagacaattacattgttgcttccatcaatctatccgcaatattaaagctgatcaaaGTCTATAAGACTTTTAAAGCTGATTCACACACACTttctcaaaatagtcagaattgaTCTAAGATGACTCAATACATTTTATTAACTTAGGTGTTTCTGCAAAGTTAATATTTTAGTCGTGTAATTTTACATCTAAGATGTTGGTGCAGTAtttaagtcatttttgggggaTGAAACAAGTAGTTTATAGTTGAATGACAAACAcgtaattgaagaatccctactgttgaccaatgacAAACAAAAAGGCGTAGACTTCGGCGACCAAAATTCGGGTTGCCGCGAGAAAAATTTGCACAAACAGATGAAAAAACCCTTGTCgaagataaacatttttttttttttaaatTCACAGTCTTTATTCATTGCAGTCACAAAAGTTGCATGATTTTATCCTTTAATCATATAACTTCAGGAGATTAAAGGAATTTGCCAGCAAGATGCATCAGGGTTAGTGCTAGTTTGTTAGGTGGAACTGCTGTACACGTTTACAGTCCAGACAATCTTGCCTCTATTGAACCAATGCCAGATACCATTTGCAATCTTTAAGCTCATATTCAAAACTTAAACCTGTGAGCACATTGCATTTACATGGATATAACTTGGAAATGAAACGCTTCAAATACAAAATCAGCATAGTCTTGAGTGGAATTTTGAACTGACTTTAAAACAGgtttcccccttccccctcccagTGCAACAGCCACAAGATTTCCTTAACCAGGAAGTCACATTACAGCCACGCAAATGCAATGCCAGGCATCACTGGCAAATCTACCCCAAGGAACAGCAATATGATCTTACGAATTGGGTGTAGGCGAGATGACATGCATGTAAGGCAATTAATTGCATGTAGAATAGTCTTCCCTGCTGTAAGAACTTTACATTTTCAATGCCCATAAACTGGGTATACCTTAGTTGAATTCTAAGGCCCTTACTGGTCAGTTCAATGCAGATTCTGTCTTTCTTACACCAATCCCCATTTGTACATGTATGACTAATATCACAAGTCATTTGAGCCAACTTTATGGTCAGAGGCGAAACTTTGCCATTGCCAAGTATAGCTATTAGCTAAGGCTTTTCCATCTTGATTACTTAAAGAGTGAGTTGAAAATTTGCAGATTAATTAACTGTTTCTATTCatttattacaaaaataaaatgtctGTACTTTTTACATTAAATAAAAGCTCCATTTAACAAGTCCGTTAGATTTAAGTAGTCAGATGAATATATTTGGAGACTGTTCCAACAACTACCAAATATCCTCAAATAGCcactcaaacaacaacaaaaacagcacCAAAACATGATGCGGAAAAAAGCTAACTTGAGCTTGACACCAAAGCACTGTCCCAATTCAGTCCGCCACTATAATCCAACAGACTGACCCTCTTCTTTGACTAAACAGGACATCATTGGGTAGTCATTCCAATCATGGTGATATTAAGGATTTCAGAGAACTTGCGGGAATAGTCCATTTTCTTTGTTGAAAAAAGTAAGATGTCTTTTATAGTTCAATTCACCTGACCAACATGGCGAGTGTTGCCCCAAGCCCAGCAAATCCAGCAAAGGCTATGAGGGTGTTCCTTACTGAGGACTCTGGATCTTGCACATGAAAGAACTCTACAAATCCATTCCAAGCATTGTTTTTGACCAGCCAGTCCCTTTGGTCAGAGAGGAGGTATGTGGCGATCTTTTGGCCCACCGACTCAATGCAGTGTCCCCTGCCCATCTCCTTCAAGTGCTGGCTCACCACTGCTCCAAATGCCACCAGGCTGGCGATGCGACCCCAGTTCGTGGTCCCATCACTGAACATGGTCGTGGCCACAGAATTGATGAAACTCATGTCATCGCATCGGTCATCTAAGTCAAGTTTGGCG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU270342 True 2240 lncRNA 0.39 3 23765855 23770162

Neighbor

gene id symbol gene type direction distance location
LOC110514561 NA coding upstream 47094 23713371 ~ 23718761 (+)
LOC110514526 LOC106605333 coding upstream 57039 23702665 ~ 23708816 (+)
LOC110514513 LOC106580947 coding upstream 69409 23677362 ~ 23696446 (+)
LOC110514472 LOC106581037 coding upstream 391415 23369004 ~ 23374440 (+)
LOC110514448 LOC106581016 coding upstream 423836 23306232 ~ 23342019 (+)
LOC110514613 hormad1 coding downstream 10238 23780400 ~ 23795199 (+)
LOC110514668 LOC106580869 coding downstream 50260 23820422 ~ 23832249 (+)
LOC110514708 LOC106580852 coding downstream 97105 23867267 ~ 23886989 (+)
LOC110514755 LOC106580807 coding downstream 121723 23891885 ~ 23907345 (+)
LOC110514733 LOC106580799 coding downstream 138726 23908750 ~ 23932207 (+)
G236625 NA non-coding upstream 14 23765552 ~ 23765841 (+)
G236623 NA non-coding upstream 3504 23761979 ~ 23762351 (+)
G236622 NA non-coding upstream 6471 23758573 ~ 23759384 (+)
G236616 NA non-coding upstream 16349 23749270 ~ 23749506 (+)
G236615 NA non-coding upstream 17192 23748429 ~ 23748663 (+)
G236647 LOC106580864 non-coding downstream 62241 23832403 ~ 23850161 (+)
G236671 NA non-coding downstream 100719 23870881 ~ 23871565 (+)
G236672 NA non-coding downstream 104831 23874993 ~ 23875259 (+)
G236658 NA non-coding downstream 113118 23883280 ~ 23889797 (+)
G236372 LOC106581434 other upstream 415040 23350091 ~ 23350815 (+)
G236370 LOC106581434 other upstream 416477 23346880 ~ 23349378 (+)
G236301 NA other upstream 566780 23198852 ~ 23199075 (+)
G236271 LOC106581124 other upstream 585556 23144516 ~ 23191853 (+)
G235569 NA other upstream 1085127 22673525 ~ 22685509 (+)
G236753 NA other downstream 285157 24055319 ~ 24055667 (+)
G238034 NA other downstream 979243 24749405 ~ 24750383 (+)
G238047 NA other downstream 995504 24765666 ~ 24766363 (+)

Expression


Co-expression Network