G236647 (LOC106580864)


Basic Information

Item Value
gene id G236647
gene name LOC106580864
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23832403 ~ 23850161 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU270453
TGTTCTTTAAAAGTTATTTTTATTTGATGacaaaatatactttgatttaaATAAGTATGTAGCCTTGCACGAGCCTTGGCAtgcatctcctgtttctgtagcgtgaggcagcttgatgtacaagtacaccccctggatgCTAGCTACGGTGATAATGTAGATAATCACATTGGACTTATATATGATTTGTAAAAACACTTCTAAAGAAGTACTGTCTATATAGACATGAAGTGATAGAAAGTGAAATGGTAAAAACAACACTAAAACAATGGAGGAAGTAAAAATGAATTACATTAAATTAATAAAAGGGCTCAGCTTTTCCAGTTAGACCCCTTTGATTGGCAGGAGTTACATGACAGGGTAGCAGCCGTACAAGGCGATGCCACACTGGTTGTCCTTGTTGCGTGACATCCGTATATATCCCTGGTCTCCCCACGATAAGCCCCAGCTGTTCTTCACCAGCCAGTAATCCTGCCCGCCCAGGGTACCGTACCCCACAGCAAGGACAGCATGGTTTATCTTCTTTGTGCAAGTTGGATCATTGTAAACTCCACTGCGGTAGAAGGTAAAATGAGGTCGGGTGGCATCAATGGCAACAGAGATGGGTCCGATGGTGGCCAGGGCTTCTTTCAGTGCCCCCTCATCCCCCTCAGGTAGAAAGCTGTACTTGGAACAGTTTGCAGCACGCTGAGCAGGGTTGTAGCTGCACTGTTGCACTCCCTTGTAGGGGTAGGATTGGTCAGAGTCAATGCCCTGGTTGTCGATGACATACTGGAAGGCCTGGCTCATGAAGCCACCATTGCAGCCCTTGTTGCCGTATTTGGAGGAGCAGTCCACCAGGTTCTGGGAGCTGATGTCTATCAGTTTACCTGTGGTCTTCATCAGCTGGCCCTCCAGGGCTCCAACAGAGCTGAATGCCCAGCAGGAGCCACAGCAGGAACACGCAATGAGGCATAAGACTGGGCAATCTCTTCTTGGGTCATGCCCAGGTCATAGGTGTGCATGTCCATGGACGCCTCCAGGTTGTGGAGGCTGATCAGCTGAAGATTCCTCTCCCAGACCTCCCTTCGGCCCAGCTCCTCGTCTGGTAGTTCTTGCCATGTGTCTTCTTCCACATCTGCCAGTGCTGTTCCAGCATTGGGTCAAACAGGGCAAATGCTGTGCCACATAGTGCAGCGAGCAGCAGGCTCCACAACATCATGCCTTGTAAAACTCGGAGTGCACCTGATGCCTTCAGAGGAGAGCAAGGCGCGTCAATTGATTTC
>TU270459
cccttcgccttgatgacagctttacacactcttggcaatctctcaaccagcttcatgaggttgttacctggaatgcatttcaattaacaggtggcatttatttccttcttaatgcgtttgagccaatcagttgtgttgtgacaaggtaccaTAGtagtgatatacagaagatagccatattcggtaaaataccaagtccatattatggcaagaacagctcaaataagcaaggagaaacgacagcccatcattactttaaaacatgaaggtcagtcaatacggaaaatgtcaagaacatttaaagtttcttcaagtgcagtcgcaaaaaccatcaagcgctgtgatgaaactggctctcatgaggaccgccacaggaaaggaagacccagagataccctcagaaattgcagcccaaataaatgcttcacagagttcaagtaagagacacatctcaacagactgtgtaaatcaggccttAATAATCAAATTTCTgcaatgaaaccactactaaaggacaccaacaagaagaagagacttgcttgggccaagaaacacgagtaatggacattagaccagtggaaatctgtcctttggtctgatgagtccaaattcaatatgtttggttccaaccgccatgtctttgtgagacgtagagcATGTGCATGATCTCTGCAtgcgtggttcccaccgtgaagaaggtaggtgtgatgttgtgggagtgctttgctggttacactgtcAATGATCTATTTgtaattcaaagcacacttaaccagcatggctaccacagtattctgcagcgatacgccatcccatctggtttgcgcttagtctgactatcatttgtttaggataatgacccaacacacctccaggctgtgtaagggctatttgaccaagaaggagagtgatggagtgctgcatcagatgacctggcctccacaatcacccaacctaaacccaattgagatggtttgggatgagttggaccgcagtgaaggaaaagcagccaacaagtgctcagcatatgtgggaactccttaaagactgttggaaagtcattccaggtaaagctggttgagagaatgccaagagtgtggaaagctgtcatcaaggcaaagggtggctaccttgaagaatctaaaaagtaacacttttctggttactacatgattagatatgtgttatttcatagttttgatgtcttcaatactaTTTTACAAatgagaaaatagtaaaaataaagaaaaccttgaatgagtaggtgtgtccaaacttttgactggtactgtatatttaaaaacattaccatgcagtgtgtgtgtgtgtgtgtgtgtgtctgcatctatcagttacacatacatgtcagtacataaagGAGCAGCATACAAACCGCACTGACTGCATCTGTTTACACAAACCGCAGCTGTTCGTCATTACCTGCATTTTGACTTTAGTGACGTAGCCCTTCTTTCTCCAGTCAAAGGTATCAGGTATGGGGGCACCGGAGGATCCTACAAATGCAGAGGGCTCCCTCTTGAGGTCAGCAGGAACACGCAATGAGGCATAAGACTGGGCAATCTCTTCTTGGGTCATGCCCAGGTCATAGGTGTGCATGTCCATGGACGCCTCCAGGTTGTGGAGGCTGATCAGCTGAAGATTCCTCTCCCAGACCTCCCTTCGGCCCAGCTCCTCGTCTGGTAGTTCTTGCCATGTGTCTTCTTCCACATCTGCCAGTGCTGTTCCAGCATTGGGTCAAACAGGGCAAATGCTGTGCCACATAGTGCAGCGAGCAGCAGGCTCCACAACATCATGCCTGCACAGAAAATAGACAAGTATTATTCAAC
>TU270455
TTTAATAGAAAACAATGTTACAATTCAATCAACAGAATTTGGTGTAAAAGTGCTGAACAATAAAATAAAAGTCAACATCATCAAAAAACCCACCAGGAGCAATCTTGATCAACAAGCCCTTTTTGCATTGACAGGAAAGTGAGACAAAACTCCCATTGCACAGCAATGTTACCTGACCTGACACACTGAATACAACCTATGTAAAGTGCTGTGCACTACGCACATCCTTCATCACAATCATAGTTGTTCCACTGTAGATCAGACTACAATTGAAGTCTGGCAGTTTGAAGATATAACAGTAAGACTTGATGTAGGGCGTTTAAAAGTGCTTGCAAAAGAACTCTGGGATACTCAAACCTCCAGACTATATGAATGTGCTATTCCAGAAACATAGTGTTATTTTCTGTATTGGGTGTAGTCATTGATTGGTGGTTTAGCTTCCCTGCTTCCATGGTGCCCTCTGCCGCTTGGTGTTCACATGATGGGGTAACTGGCCAGGTTGGCCAAGGTAAGGGTAAGCCTCCTCTGTGTCGATGCCTCCGTTTTCCTCAACGTATTCGAAGGCGTTGGTCATGTAGCCTCCACCACAGCCATTGTTCTCAGTAACACAGTCCACCAGGTTCTGGGGGCTGAGGTCTATCAGTTTGCCTGTGGTCTTTGCCAGCTGGCCCTCCAGGGCCCCAGCAGAGCTGAAGGCCCAGCAGGAGCCACAGGAGAGCTGGTTCTTGACTGGGGTCACCATGCCCTTCTTGCGGTAGTCGATGGACCTGGGGAGGTTCACCACATTGTTGCCAGGGATCCAGGTGTTGCTACGGTCCCTGTTCATGGGCACCTGAAGGCCAGTCAGCTTTGCAACTATCTCCTCTGAcgtCATGTCTCCCAGGTGGTTCATGCCCAGCTCGTACGAGTGAATGCCCAGAGCGGCCTCCTCATTGTGGGCTTCGATCAGACGCATGTTCTTCTCCCAGATGGTTCTACGGATCGCCTCCTCCCCcaGGCCGTTGTACTCTCTCAGGTGGGTGGTCTTCCAGGAGTCCCACTGTGCGTCCAGTGACATCTCATTCAGAGGATGGGCTAGGACTGAGCCCAAGAGCAACAGCACACAACCACACAGCAGCATTCTTGGTTGTAGACTTGGAGAGAAGGTGTCGGATGAATTCCTTTGACCAGTTGTTTCCCTGCGATGAAGTAGGTCGCCGTGTGAGTAGTTATATAGTCTGGAGTTTGAGGAAGTGCGACGGGAGTTTAGGAGGGGGAAAAGTTTCAGTAAAGGGGAATTACATCTGGAATCGCTCATCTAAAGGGGCCAGCCAGATGATGTCAGGTGTCAAATTACAGGAGCGTCTCTAACTTCAAAGTCAATATTTAACATTGCAATAGGCCTTTATTCATTGTGCACATTCATCTCAGTCGCATTTGTTTATAACAAGCGTATGACGATTATTTGAATTAAAAGATGTAGGCAAGCAGTATCCTCTTACTGTTTATTTAGAAGATTCAGAAAAT
>TU270456
TTTAATAGAAAACAATGTTACAATTCAATCAACAGAATTTGGTGTAAAAGTGCTGAACAATAAAATAAAAGTCAACATCATCAAAAAACCCACCAGGAGCAATCTTGATCAACAAGCCCTTTTTGCATTGACAGGAAAGTGAGACAAAACTCCCATTGCACAGCAATGTTACCTGACCTGACACACTGAATACAACCTATGTAAAGTGCTGTGCACTACGCACATCCTTCATCACAATCATAGTTGTTCCACTGTAGATCAGACTACAATTGAAGTCTGGCAGTTTGAAGATATAACAGTAAGACTTGATGTAGGGCGTTTAAAAGTGCTTGCAAAAGAACTCTGGGATACTCAAACCTCCAGACTATATGAATGTGCTATTCCAGAAACATAGTGTTATTTTCTGTATTGGGTGTAGTCATTGATTGGTGGTTTAGCTTCCCTGCTTCCATGGTGCCCTCTGCCGCTTGGTGTTCACATGATGGGGTAACTGGCCAGGTTGGCCAAGGTAAGGGTAAGCCTCCTCTGTGTCGATGCCTCCGTTTTCCTCAACGTATTCGAAGGCGTTGGTCATGTAGCCTCCACCACAGCCATTGTTCTCAGTAACACAGTCCACCAGGTTCTGGGGGCTGAGGTCTATCAGTTTGCCTGTGGTCTTTGCCAGCTGGCCCTCCAGGGCCCCAGCAGAGCTGAAGGCCCAGCAGGAGCCACAGGAGAGCTGAGAAAGAGAGGACATAAAACATTTACAGAGCTGCCTTCTCCAATTTGTCCATAAGG
>TU270457
TTTAATAGAAAACAATGTTACAATTCAATCAACAGAATTTGGTGTAAAAGTGCTGAACAATAAAATAAAAGTCAACATCATCAAAAAACCCACCAGGAGCAATCTTGATCAACAAGCCCTTTTTGCATTGACAGGAAAGTGAGACAAAACTCCCATTGCACAGCAATGTTACCTGACCTGACACACTGAATACAACCTATGTAAAGTGCTGTGCACTACGCACATCCTTCATCACAATCATAGTTGTTCCACTGTAGATCAGACTACAATTGAAGTCTGGCAGTTTGAAGATATAACAGTAAGACTTGATGTAGGGCGTTTAAAAGTGCTTGCAAAAGAACTCTGGGATACTCAAACCTCCAGACTATATGAATGTGCTATTCCAGAAACATAGTGTTATTTTCTGTATTGGGTGTAGTCATTGATTGGTGGTTTAGCTTCCCTGCTTCCATGGTGCCCTCTGCCGCTTGGTGTTCACATGATGGGGTAACTGGCCAGGTTGGCAATGCCACACGCATTCCCGCGGTTACGTGCCATCATGATGTAGCCCTGTTTGCCCCAGCTCTCGCTCCAGCTGTTCTTGACGATCCAGAATTTCTCGCCCTTGGCAGTTTGTCCATAGCCCACTGCAAGCACGGCGTGGTTGATGTCATCCTTGTTGCAGTTGGGGTCGTAGTACACACCTGCTGGTAGAATTGGAAGGTGGAGAGGGTGGCATCGATGCCCACAGCCACAGGCCCCACTTTGGCTACAGCCTTGGTCAGTGCCTGCTCGTCTCCCTCAGGGATCTCCTTGAACCCGCGACACTGAGCACCCATGCCAGACGCGTTGTAGACACACTGCTCATCCTGTAGACAGAGTGGTACACATGGATTGGTTTATTTATGATTCAGATTCTGAATAGTCACATGTATAGGGTTGCAGGTGTGGTTGCAAGGTAAAGTGAAAATCTTAGGCTGTgagctccaacatgcaggactagtgaaataaaataatgaaaatggtAATAAAAACATTAGAAATAGCACTATATACATAATAACAACCGTGGCAGTGATGGAGAaataaatgtccattggggtggaggcagagtaaagactgttgggggtggggttgtgtggg

Function

NR:

description
cathepsin K-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU270453 False 1265 lncRNA 0.36 8 23832403 23840472
TU270459 False 1847 lncRNA 0.48 3 23836545 23839623
TU270455 False 1506 lncRNA 0.35 6 23841367 23850161
TU270456 False 777 lncRNA 0.45 2 23841367 23844466
TU270457 True 1122 lncRNA 0.45 3 23841367 23842769

Neighbor

gene id symbol gene type direction distance location
LOC110514668 LOC106580869 coding upstream 154 23820422 ~ 23832249 (+)
LOC110514613 hormad1 coding upstream 37204 23780400 ~ 23795199 (+)
LOC110514561 NA coding upstream 113642 23713371 ~ 23718761 (+)
LOC110514526 LOC106605333 coding upstream 123587 23702665 ~ 23708816 (+)
LOC110514513 LOC106580947 coding upstream 135957 23677362 ~ 23696446 (+)
LOC110514708 LOC106580852 coding downstream 17106 23867267 ~ 23886989 (+)
LOC110514755 LOC106580807 coding downstream 41724 23891885 ~ 23907345 (+)
LOC110514733 LOC106580799 coding downstream 58727 23908750 ~ 23932207 (+)
LOC110514794 LOC106580834 coding downstream 88789 23938950 ~ 23941425 (+)
LOC110514781 isg20l2 coding downstream 96647 23946808 ~ 23950487 (+)
G236549 LOC106580904 non-coding upstream 62241 23765855 ~ 23770162 (+)
G236625 NA non-coding upstream 66562 23765552 ~ 23765841 (+)
G236623 NA non-coding upstream 70052 23761979 ~ 23762351 (+)
G236622 NA non-coding upstream 73019 23758573 ~ 23759384 (+)
G236616 NA non-coding upstream 82897 23749270 ~ 23749506 (+)
G236671 NA non-coding downstream 20720 23870881 ~ 23871565 (+)
G236672 NA non-coding downstream 24832 23874993 ~ 23875259 (+)
G236658 NA non-coding downstream 33119 23883280 ~ 23889797 (+)
G236684 NA non-coding downstream 82148 23932309 ~ 23933163 (+)
G236372 LOC106581434 other upstream 481588 23350091 ~ 23350815 (+)
G236370 LOC106581434 other upstream 483025 23346880 ~ 23349378 (+)
G236301 NA other upstream 633328 23198852 ~ 23199075 (+)
G236271 LOC106581124 other upstream 652104 23144516 ~ 23191853 (+)
G236753 NA other downstream 205158 24055319 ~ 24055667 (+)
G238034 NA other downstream 899244 24749405 ~ 24750383 (+)
G238047 NA other downstream 915505 24765666 ~ 24766363 (+)
G238050 NA other downstream 925118 24775279 ~ 24775945 (+)

Expression


Co-expression Network