G236658


Basic Information

Item Value
gene id G236658
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23883280 ~ 23889797 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU270474
ctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtgtatatatatatctgatgACTTATCATCCTAAATATCTTGGAGAAGAAAATAATGAACAGTGGTTGTCTAGAAGCCAGTTTATTTAAACTATGTtgtcattttaaaaaaaatggtgtCATTTTCTTTATTCAAGTATTTATTAAACATTACAATAACAGTGCTACAAAACGAATTTGCCGTTACTACATGATGATATGAAATATTATACATGTTCATGTGTATAAGGAATGCTCTTAAAGGGTCAAGGTTCGTTTCACTCATATCAGGTGTGCTTGGTGGATCTGATATACAGATATATAGTAAGTGTGGATATCATGTGTCAACTTGCCAATACAGGTCAACCAAGCATTGCCCTCTGACCTGAGGATAACTATTTAAGCTTATCCACAGAGGATCCATTCAGAGACTGCATACTCACCATTTGCTTAAGGCTCTATGAAACTATAATAATATGCAAACACATGATTGTAGTTACATAATAGATGTATAGAATATTGTACTAGGCTATATTcaaatactgtagttaaatcagtTTCACTGTACAGTAACATTTCATGGCTCACTTTTTGACTAGCCTCTAGTTTACGAAAATTCATGTTGTTTTGGGGACAGGAGTATTATTTAGCTATCAGAATATGACAGTGTCCAGCGGGTGATGAAATTATAATCTGTACATAAGAATGTATCCAATTCCATGTCATATTATAAGCAATCTTTTAAGCTTTAAATCCTATTTCCATTTGATTTTTTATAACAAAGTAAGATAGTTCGCACACATCAAATACAGAGAATTCAAGATCATTTTTGCAAGTCGTTTTCTTTTTATATCTGCGGAATTTCATACTGTATAATTTGGTAAGATGTTGCAGTCAGCAACAATGCTTCAATGATAATATAACTGCATAACATTCATGTAACCTCACACAGTTTATTTTTCCTGAATGTTTATCGATCACAGGGTATTGAAAATATGTGCCTGAGTAATCTTACTCGCCATTAAAGAAACAATGATAAACTTTAATGGCGAACAGTACCTTGTGAAATTCAATGTCAAATGTAGGTCGTGGACATTTCCATGCTCTAGGTTACTTTATGGCTGTATCTAGTCCTGTGGATTAGTGTCACTCAAATATGCCACTCTTCTTTCATGTACACTTGTTGTGTAGGTACACACAAACCAAAATTCCAAAACAATGTAAATTATGTACACATCTATAGTTAAGTCTGTTTTGCTATCTTATTTGTAAAATATAATCTTTTTGCATTTTGAAATGATTAAAAACCTCCTTTAACCTG
>TU270475
ctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtatatatatctgatgACTTATCATCCTAAATATCTTGGAGAAGAAAATAATGAACAGTGGTTGTCTAGAAGCCAGTTTATTTAAACTATGTtgtcattttaaaaaaaatggtgtCATTTTCTTTATTCAAGTATTTATTAAACATTACAATAACAGTGCTACAAAACGAATTTGCCGTTACTACATGATGATATGAAATATTATACATGTTCATGTGTATAAGGAATGCTCTTAAAGGGTCAAGGTTCGTTTCACTCATATCAGGTGTGCTTGGTGGATCTGATATACAGATATATAGTAAGTGTGGATATCATGTGTCAACTTGCCAATACAGGTCAACCAAGCATTGCCCTCTGACCTGAGGATAACTATTTAAGCTTATCCACAGAGGATCCATTCAGAGACTGCATACTCACCATTTGCTTAAGGCTCTATGAAACTATAATAATATGCAAACACATGATTGTAGTTACATAATAGATGTATAGAATATTGTACTAGGCTATATTcaaatactgtagttaaatcagtTTCACTGTACAGTAACATTTCATGGCTCACTTTTTGACTAGCCTCTAGTTTACGAAAATTCATGTTGTTTTGGGGACAGGAGTATTATTTAGCTATCAGAATATGACAGTGTCCAGCGGGTGATGAAATTATAATCTGTACATAAGAATGTATCCAATTCCATGTCATATTATAAGCAATCTTTTAAGCTTTAAATCCTATTTCCATTTGATTTTTTATAACAAAGTAAGATAGTTCGCACACATCAAATACAGAGAATTCAAGATCATTTTTGCAAGTCGTTTTCTTTTTATATCTGCGGAATTTCATACTGTATAATTTGGTAAGATGTTGCAGTCAGCAACAATGCTTCAATGATAATATAACTGCATAACATTCATGTAACCTCACACAGTTTATTTTTCCTGAATGTTTATCGATCACAGGGTATTGAAAATATGTGCCTGAGTAATCTTACTCGCCATTAAAGAAACAATGATAAACTTTAATGGCGAACAGTACCTTGTGAAATTCAATGTCAAATGTAGGTCGTGGACATTTCCATGCTCTAGGTTACTTTATGGCTGTATCTAGTCCTGTGGATTAGTGTCACTCAAATATGCCACTCTTCTTTCATGTACACTTGTTGTGTAGGTACACACAAACCAAAATTCCAAAACAATGTAAATTATGTACACATCTATAGTTAAGTCTGTTTTGCTATCTTATTTGTAAAATATAATCTTTTTGCATTTTGAAATGATTAAAAACCTCCTTTAACCTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU270474 False 1372 lncRNA 0.37 2 23883280 23889797
TU270475 True 1368 lncRNA 0.33 2 23883280 23889797

Neighbor

gene id symbol gene type direction distance location
LOC110514668 LOC106580869 coding upstream 51031 23820422 ~ 23832249 (+)
LOC110514613 hormad1 coding upstream 88081 23780400 ~ 23795199 (+)
LOC110514561 NA coding upstream 164519 23713371 ~ 23718761 (+)
LOC110514526 LOC106605333 coding upstream 174464 23702665 ~ 23708816 (+)
LOC110514513 LOC106580947 coding upstream 186834 23677362 ~ 23696446 (+)
LOC110514755 LOC106580807 coding downstream 2088 23891885 ~ 23907345 (+)
LOC110514733 LOC106580799 coding downstream 19091 23908750 ~ 23932207 (+)
LOC110514794 LOC106580834 coding downstream 49153 23938950 ~ 23941425 (+)
LOC110514781 isg20l2 coding downstream 57011 23946808 ~ 23950487 (+)
LOC110503942 LOC106580754 coding downstream 67305 23957102 ~ 23975804 (+)
G236672 NA non-coding upstream 8021 23874993 ~ 23875259 (+)
G236671 NA non-coding upstream 11715 23870881 ~ 23871565 (+)
G236647 LOC106580864 non-coding upstream 33119 23832403 ~ 23850161 (+)
G236549 LOC106580904 non-coding upstream 113118 23765855 ~ 23770162 (+)
G236625 NA non-coding upstream 117439 23765552 ~ 23765841 (+)
G236684 NA non-coding downstream 42512 23932309 ~ 23933163 (+)
G236686 NA non-coding downstream 43491 23933288 ~ 23933833 (+)
G236687 NA non-coding downstream 44139 23933936 ~ 23934443 (+)
G236707 NA non-coding downstream 55749 23945546 ~ 23945785 (+)
G236372 LOC106581434 other upstream 532465 23350091 ~ 23350815 (+)
G236370 LOC106581434 other upstream 533902 23346880 ~ 23349378 (+)
G236301 NA other upstream 684205 23198852 ~ 23199075 (+)
G236271 LOC106581124 other upstream 702981 23144516 ~ 23191853 (+)
G236753 NA other downstream 165522 24055319 ~ 24055667 (+)
G238034 NA other downstream 859608 24749405 ~ 24750383 (+)
G238047 NA other downstream 875869 24765666 ~ 24766363 (+)
G238050 NA other downstream 885482 24775279 ~ 24775945 (+)

Expression


Co-expression Network