G237442


Basic Information

Item Value
gene id G237442
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23905374 ~ 23907345 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU271338
TGTAGTTGATTACTTTATTGATTTTCACTGTACATGTTCAGTAAAGGGAAACATATGGAGTTACAGATCTGTTACATGGACATGTATTAACACTTCATATAGACAGACATCTGTCCTTAAAAAAAATGGTTATGGTGAGGCATTAACGAGCATGATACCAATACAATCTCCTCTTCAATCGAGTTTGGTAAGCTGATTCCCAATACAAATGTACTAAGACACAGAATGCAATCAACACTGTCCAAAGCACCAGAGAAAGGATTTAAAGACAATACAATTCACTTCACTCTATTTCTCTGCTGGCATTATTTATCTAACGGGTAATTGAACACAACAAACCAGTTTAAATCTTTCGAGGATAATGATAATCACTCGCATGCGATATATCCACTGTTTATGTCCACGTCAAAGCGGGGACTCCCGGCTATGAAGGTGGTCATTAAATAAAGTGCTCCAGAGAAAACAAACTCCCATATCACTGCTGCCCCTTGGAAATCCATGAAAGGCCAAATACAATCAACTCTGCACAGCCACGATTCACTGACCGTTTTTAACAATACCCACTGACACTAGGCCATCTGTCTTGGTAAAAGAGCTTGTATGTCTCTGCAGTGAGCGATACAGGTTCAGTTGCCTAATTAGTGTTGGCTAGCGTATGAGTGAGTGGCTCCTGTTCACTGTTTTCAGAGACACACCAGCTTCATGCTCAAAATACAATGAAACAGATAAGCAACAGTAAATACTGGAGTAAAGAGAATGAGATTGAAGTGGGTGATTGGTAaacaagaggtgtgtgtgtgtgtgtgtgtgtgtgtgTGTGTGTGAGTTTGAGAAAGAGATTTGGGAAACCAATTACTCAAAGTGCTAAGTGAGTGAGAAGCGGCAGGCGGCGGATGAGGCGGCTCAACACAGCTTATGTTTGGCACAGTCAATAACCCGCATCAGTGCAATGCAGCAAGCAGATCCTTCCGAGACCTCGAGACAACAAACTTACAGCCACCcccagagagaaagatagaaccTGCAGAACTATGGCTAAAACTGTTCTAAGAACAGCATTATGTCGACTGTTTTCGACCAATATTTTCAGGCGACAGTTTTTTTTTGCCATTTCAAAATTCGCCTACAAAGCTCAGTGGCACAGTTCAAAACACAGTAGTGGTTATAAGGTGGTGCTTCAGCACTGAGATAAAACAATCAATACATGGGGACAATAGACCTGCACTTTGTTGCAACTACGTTCATATTAATATGTTACATTCAACATTTGCTTTGAGTAAACCACTCCCTCCCAGAAAACATTCTCTGCCTCCAATAAAGCATACACTATTGTTATGTGAGGTCAGGtgctaaaataaaaaacatctaTTGCTTAAAGAGGAATTTTGTTCCATATCTTCCAGAAATGTCAATCAATTTCAGTCTTTCTCCCCAGAGTATGGTGGCTGCTCAAAGTGTTCTACTTCACAAAATGATCCTATCAAATTATGTCAAGCCTTTTGTTACAGCATACAGATACAAGTATGAAAATAACCCCTTTGAGTATTGTGCACTGGATTTTCCCATTGAGAATAGGTTAGTTAAAGCAGTCAATGAGTAACATCATTGTACATCCACAGTATTATGGAAATCCAGAGAGGACATATGAATTAAAAAAATAGTTATCTCGTTGTGTCGAGATCAAGACATATTTTTCTCATAACAAAAGTTGTTTTGTCGAGATCACAAGATAATCAAAAGTACAACTTATCACCCATTCATTTCTTCTTCAGATGCCCGATAACCACTTCACCAAGGAGCCCTGTGGCTGTGTGGGGCATTTAAGCACGGAACGATGCCTGACAGGCGACACAGTCTCCCAGGGTGCCCGCCACCCCCAAGACCATATTAAATCATATGCAAgaaacaacacagctctacttGTGAGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU271338 True 1929 lncRNA 0.45 2 23905374 23907345

Neighbor

gene id symbol gene type direction distance location
LOC110514697 LOC106580864 coding downstream 55450 23841341 ~ 23849924 (-)
LOC100136261 cats coding downstream 64862 23832402 ~ 23840512 (-)
LOC110514600 ensa coding downstream 125216 23771511 ~ 23780158 (-)
LOC110514588 LOC106580904 coding downstream 134498 23768099 ~ 23770876 (-)
LOC110514538 tmod4 coding downstream 175476 23719389 ~ 23729898 (-)
LOC110514815 LOC106580773 coding upstream 68529 23975874 ~ 23980300 (-)
LOC118947709 NA coding upstream 160585 24067930 ~ 24078853 (-)
LOC110514831 nes coding upstream 281864 24189209 ~ 24198813 (-)
gpatch4 gpatch4 coding upstream 310160 24217505 ~ 24221727 (-)
LOC110514890 LOC106580679 coding upstream 351736 24259081 ~ 24286618 (-)
G237479 NA non-coding downstream 11840 23893301 ~ 23893534 (-)
G237478 NA non-coding downstream 13208 23891934 ~ 23892166 (-)
G237472 NA non-coding downstream 17537 23882748 ~ 23887837 (-)
G237470 NA non-coding downstream 20503 23881647 ~ 23884871 (-)
G237464 NA non-coding downstream 31837 23873316 ~ 23873537 (-)
G237512 NA non-coding upstream 26658 23934003 ~ 23934828 (-)
G237510 NA non-coding upstream 30256 23937601 ~ 23938518 (-)
G237522 NA non-coding upstream 58619 23965964 ~ 23967707 (-)
G237563 NA non-coding upstream 138118 24045463 ~ 24045671 (-)
G237567 NA non-coding upstream 150999 24058344 ~ 24058612 (-)
G237047 NA other downstream 716343 23157109 ~ 23189031 (-)
G235881 NA other downstream 1330385 22573833 ~ 22574989 (-)
LOC118946878 NA other downstream 2149873 21744425 ~ 21755710 (-)
G235092 LOC100194668 other downstream 2161963 21738845 ~ 21743411 (-)
G237657 LOC106605316 other upstream 273211 24180556 ~ 24183964 (-)
G237832 NA other upstream 613874 24521219 ~ 24521544 (-)
LOC110515154 LOC106605289 other upstream 862217 24767049 ~ 24799511 (-)
LOC110515208 LOC106581894 other upstream 1029171 24936516 ~ 25052970 (-)
LOC110515384 LOC106582009 other upstream 1291743 25171287 ~ 25236536 (-)

Expression


Co-expression Network