G237657 (LOC106605316)


Basic Information

Item Value
gene id G237657
gene name LOC106605316
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24180556 ~ 24183964 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU271572
AAAAAATAAAATTGTCTTTTCTATATCATCATTACAATTACCATCGATGGTCACAATAATGATAATATTAACAGTAATAATAGCAATTACCATAGAACAATTATAATAAAAACAGACAATAGAACTGTCACCAGCACAAATTAACACTGGAAAGTGAGATTCTCTAAACATCATTCATTATACATGGGAAATATGGGGGCGCAGGTTAACTATTGTCATGACGATTGTCTTTTCATTTGTGATTACAGTGACCCTTAGTGTTGTTCTGAGATAATGTCAGGGCTTTATGCAACACATCGATTGGCCAATGTCCAGAGTACTAACCAACCATCTCCCCATAGTCTGCTTCCACTAGTGACCATTTAGTCTAGTTATGAAACATCGCTTCATGGCGTGTGGCCCTATTCAAGACATAGCTACCATTTTTAtgaaaaaaaaaccccatcaGGGTCAATGTTTTGTTCAAAGCTTAGGACACAACAGTCTTACAGTCCAAGGGTGTGCGAACATGCCGGCAGTCGTGAtagctctctctctgccatccgTCTCTAGACGATCGTCTAGACTCCTGAAGAGTCAGGCTGCACAATCCCTACAGCAACAACTACAACGATATAAAACAATAAAGAGCCAATGTGAGGTCATTTGAACAGAGTGCAGAGTATATGTGAGTAtggtgtttgagtgtgtggagaAATTAGCCGTTTTGGCAGAAAATTGATAGTCGTGGAGGTCAAATGAGAGTGAGATGGACTTGTCTTTTAAGTCACGGGTAGGGAGCGAGTGAAATGCTGTAATTAATTAATGTGGCCAGGGAGGAACTCTCGTCTAACATAAAGCACAAGGGATACTTGTCTGgctaatgtgtgtgaatgtgtttgtatgtgtgtgttggatgaGTTTGATGTACCTGAGGACATGCAGACATGACTGTCCCATTCTGGAGGACACCTGTCTTTTAAAGAGGGGGCATTTTGGGGGATTGGGGGGAAGGAAGGGGTTAAAGTGCGCTCCATCAGAGTACTAACCACTGCTCACTCAAATAGTCCAATCCACTGCTACTTTCCATTCTGTCCCTCTAGCACCCTCACTTGGCTTTGCAACGTAGTACACTTATGTACACACAAATAGAACGACAGATCCACTGAGAATCAACACATTGGCTTTTAGGGATATCCTGCTGAACATATGTGAACATATATTTCTATATACAATCCCTGTCATCTATCGTTTTCTCTGCATGGTATGCAGTTCATCCCTTACTCTCAAAATCTACTATCGctgctgttatatatatatatatatacccacaAAAAAACAATATCCCTGCTATACAAAAGCCATACAGAAGGAAACAGAACAAATTGCTTATATACACAGTTCTTTGCTTTTTCTCCCAGTTTATATCTCTTATTCAGAGCCTTCTGAATCACTGCCattgtttaacaaaaatacttttCGTGTGTGAGTGCAGATGGATTTGAGCGTGGGAAAAATCTAAAAAAGTCAAGAAGGTAGTAACAAAAAAACTTTACACAAAAAGAGCATTTGAAATAAATATCAAAAACAGGAACACACACGTAGAATCTGAAGTTGATCTGTAGGTATCTGTAGCATGTGTCATAGAGCTAGTGCAGCCCATCCCTGATAAAACAGTATTTGACCTAGATAAGGTATCGATGTCTCAGATTAAACAGCTATTTGCATGATTCTGATTAAATACCTGGCTAAAACTAAACAAAACAAGGATCGTCCACTTTAGAACAGTGAATCCTGTCTTATCAAATGGATAGCTAGTAAGTTTGACTTGGTGAATTTTGGGTTCTTAAATCTAAATTAGAAATGTTTATAGAAATGTAAAGATGGCTGATGGAcaagtcagacagagagaggacgtaATATTCCAACAAAACCGTTTAAATCTCATTCACCAATCTCATACTCTTTACAAAAACACCAAAAGCTGGATATAACAGTACCACTGGGCAGATACAAAGAAGTGGATTCATTTTGGTTGTCGTACTGTTTCTCAACAGAGCAGTGCAGCTGGACTAGAGACCTACTGTGGATAAATGACAGGAGGATACCAGATGTGTATTATGTGATGTAGAGGGTAAACAGAAAACCCAGCAAAGCCAATAGTCAGTCAATAGTCAGTCAGTTTTCTAgacgctctctctcccttcaaaACGAAAAGGAGACAGAGCCAGCTTGAACAAAAGAGAACTCATTCATTCTAATCCTAATCTTGTCCAACACACTATGTTGACATGTAATCCCTGGTTCGGTTACTCTGCCCCTATAGGGGGTGCATGTgtgagaatatgtgtgtgtgtgtgtaAGAGCATGCGCAAATGGGCGTGTccggtgcatgtgtgtgtgtgtttgtgtgtggtggaGGCATGTGTGGAGGTCAGCATTTACTGTACATACGGTAAAtaggtgtggggtgggggggggtgtgagagagaggggggcatctCTCCCCTTCACTCCCTTGTTCTACACATCTATGTTACCCAAGTGTCCAGTCTCATTCTCTTCACATTGGCACCCTCctgctcctgctgctcctgcGTGGACGAGGGCCTCAGGAGCCCCATGGCCGAGGAGGCCCCTCCCTGGTGGTGGAAGTCCTGGGCCCGCCCCTGGGCCCCATCGTCCCGGTCCCCCTCGTAGGAGCTGCCGTTGCTGCTCAAGCTGCCGACGGGCGAGCGGCCCTGCAGGGTGGACGGCTCCAGGCGCAGGGCCCCTGGGTACTGGCCTGACATAGGGGCCCCTGTGATGGTCACTAGGTCTCCTCCTCCGCCACCCCCGACTGTGGAGCACGGGGTGCTGCGGTCACGGTTGGGCGACACGGGCTCCGACTTGATGCTGATGTTGGGGTTGGTGTTAATTGTCAGCATGGTGCCCTGAGGTAAGTGGCCCACC
>TU271573
TTCAATTTCGATTTTATTTCTGTGTGATGTAAATTCTTATTGATATTACATTTCATATTTATTTCCTATAACATGATTCATTCCTTTTTTTGTGTTATGCCCATGCATTGACATCTTTGTGTCTAGTCGGAAATAAATTAAATGTGTCTTGTCCCCACTTTACTATGTGTAGACTAAGTTTTATACATTTGACTAAAAATTGCAGCATTGTATTAAACTTGTTTACCACCTTCCATGATCTCACATGTACTAATATTACTACAGCCGTTTTGTTTTATGTCATAAATCGTGCAATATTTGTACACCATTTGAAGAAAAAACaaaaaatgaaaacaaaacGTCATGACGATTGTCTTTTCATTTGTGATTACAGTGACCCTTAGTGTTGTTCTGAGATAATGTCAGGGCTTTATGCAACACATCGATTGGCCAATGTCCAGAGTACTAACCAACCATCTCCCCATAGTCTGCTTCCACTAGTGACCATTTAGTCTAGTTATGAAACATCGCTTCATGGCGTGTGGCCCTATTCAAGACATAGCTACCATTTTTAtgaaaaaaaaaccccatcaGGGTCAATGTTTTGTTCAAAGCTTAGGACACAACAGTCTTACAGTCCAAGGGTGTGCGAACATGCCGGCAGTCGTGAtagctctctctctgccatccgTCTCTAGACGATCGTCTAGACTCCTGAAGAGTCAGGCTGCACAATCCCTACAGCAACAACTACAACGATATAAAACAATAAAGAGCCAATGTGAGGTCATTTGAACAGAGTGCAGAGTATATGTGAGTAtggtgtttgagtgtgtggagaAATTAGCCGTTTTGGCAGAAAATTGATAGTCGTGGAGGTCAAATGAGAGTGAGATGGACTTGTCTTTTAAGTCACGGGTAGGGAGCGAGTGAAATGCTGTAATTAATTAATGTGGCCAGGGAGGAACTCTCGTCTAACATAAAGCACAAGGGATACTTGTCTGgctaatgtgtgtgaatgtgtttgtatgtgtgtgttggatgaGTTTGATGTACCTGAGGACATGCAGACATGACTGTCCCATTCTGGAGGACACCTGTCTTTTAAAGAGGGGGCATTTTGGGGGATTGGGGGGAAGGAAGGGGTTAAAGTGCGCTCCATCAGAGTACTAACCACTGCTCACTCAAATAGTCCAATCCACTGCTACTTTCCATTCTGTCCCTCTAGCACCCTCACTTGGCTTTGCAACGTAGTACACTTATGTACACACAAATAGAACGACAGATCCACTGAGAATCAACACATTGGCTTTTAGGGATATCCTGCTGAACATATGTGAACATATATTTCTATATACAATCCCTGTCATCTATCGTTTTCTCTGCATGGTATGCAGTTCATCCCTTACTCTCAAAATCTACTATCGctgctgttatatatatatatatatacccacaAAAAAACAATATCCCTGCTATACAAAAGCCATACAGAAGGAAACAGAACAAATTGCTTATATACACAGTTCTTTGCTTTTTCTCCCAGTTTATATCTCTTATTCAGAGCCTTCTGAATCACTGCCattgtttaacaaaaatacttttCGTGTGTGAGTGCAGATGGATTTGAGCGTGGGAAAAATCTAAAAAAGTCAAGAAGGTAGTAACAAAAAAACTTTACACAAAAAGAGCATTTGAAATAAATATCAAAAACAGGAACACACACGTAGAATCTGAAGTTGATCTGTAGGTATCTGTAGCATGTGTCATAGAGCTAGTGCAGCCCATCCCTGATAAAACAGTATTTGACCTAGATAAGGTATCGATGTCTCAGATTAAACAGCTATTTGCATGATTCTGATTAAATACCTGGCTAAAACTAAACAAAACAAGGATCGTCCACTTTAGAACAGTGAATCCTGTCTTATCAAATGGATAGCTAGTAAGTTTGACTTGGTGAATTTTGGGTTCTTAAATCTAAATTAGAAATGTTTATAGAAATGTAAAGATGGCTGATGGAcaagtcagacagagagaggacgtaATATTCCAACAAAACCGTTTAAATCTCATTCACCAATCTCATACTCTTTACAAAAACACCAAAAGCTGGATATAACAGTACCACTGGGCAGATACAAAGAAGTGGATTCATTTTGGTTGTCGTACTGTTTCTCAACAGAGCAGTGCAGCTGGACTAGAGACCTACTGTGGATAAATGACAGGAGGATACCAGATGTGTATTATGTGATGTAGAGGGTAAACAGAAAACCCAGCAAAGCCAATAGTCAGTCAATAGTCAGTCAGTTTTCTAgacgctctctctcccttcaaaACGAAAAGGAGACAGAGCCAGCTTGAACAAAAGAGAACTCATTCATTCTAATCCTAATCTTGTCCAACACACTATGTTGACATGTAATCCCTGGTTCGGTTACTCTGCCCCTATAGGGGGTGCATGTgtgagaatatgtgtgtgtgtgtgtaAGAGCATGCGCAAATGGGCGTGTccggtgcatgtgtgtgtgtgtttgtgtgtggtggaGGCATGTGTGGAGGTCAGCATTTACTGTACATACGGTAAAtaggtgtggggtgggggggggtgtgagagagaggggggcatctCTCCCCTTCACTCCCTTGTTCTACACATCTATGTTACCCAAGTGTCCAGTCTCATTCTCTTCACATTGGCACCCTCctgctcctgctgctcctgcGTGGACGAGGGCCTCAGGAGCCCCATGGCCGAGGAGGCCCCTCCCTGGTGGTGGAAGTCCTGGGCCCGCCCCTGGGCCCCATCGTCCCGGTCCCCCTCGTAGGAGCTGCCGTTGCTGCTCAAGCTGCCGACGGGCGAGCGGCCCTGCAGGGTGGACGGCTCCAGGCGCAGGGCCCCTGGGTACTGGCCTGACATAGGGGCCCCTGTGATGGTCACTAGGTCTCCTCCTCCGCCACCCCCGACTGTGGAGCACGGGGTGCTGCGGTCACGGTTGGGCGACACGGGCTCCGACTTGATGCTGATGTTGGGGTTGGTGTTAATTGTCAGCATGGTGCCCTGAGGTAAGTGGCCCACC

Function

NR:

description
PREDICTED: myocyte-specific enhancer factor 2D homolog isoform X7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU271572 False 2931 TUCP 0.32 2 24180556 24183554
TU271573 True 3056 TUCP 0.31 3 24180556 24183964

Neighbor

gene id symbol gene type direction distance location
LOC118947709 NA coding downstream 101703 24067930 ~ 24078853 (-)
LOC110514815 LOC106580773 coding downstream 200256 23975874 ~ 23980300 (-)
LOC110514697 LOC106580864 coding downstream 330632 23841341 ~ 23849924 (-)
LOC100136261 cats coding downstream 340044 23832402 ~ 23840512 (-)
LOC110514600 ensa coding downstream 400398 23771511 ~ 23780158 (-)
LOC110514831 nes coding upstream 5245 24189209 ~ 24198813 (-)
gpatch4 gpatch4 coding upstream 33541 24217505 ~ 24221727 (-)
LOC110514890 LOC106580679 coding upstream 75117 24259081 ~ 24286618 (-)
LOC110514944 LOC106580659 coding upstream 129591 24313555 ~ 24323816 (-)
LOC110514960 raa2a coding upstream 136780 24320744 ~ 24330914 (-)
G237594 NA non-coding downstream 78455 24101852 ~ 24102101 (-)
G237593 NA non-coding downstream 79088 24101224 ~ 24101468 (-)
G237567 NA non-coding downstream 121944 24058344 ~ 24058612 (-)
G237563 NA non-coding downstream 134885 24045463 ~ 24045671 (-)
G237522 NA non-coding downstream 212849 23965964 ~ 23967707 (-)
G237663 NA non-coding upstream 15684 24199648 ~ 24199944 (-)
G237701 LOC106605310 non-coding upstream 71921 24255885 ~ 24256465 (-)
G237703 NA non-coding upstream 100235 24284199 ~ 24284429 (-)
G237705 NA non-coding upstream 101593 24285557 ~ 24285790 (-)
G237714 LOC106605309 non-coding upstream 116229 24300193 ~ 24300653 (-)
G237047 NA other downstream 991525 23157109 ~ 23189031 (-)
G235881 NA other downstream 1605567 22573833 ~ 22574989 (-)
LOC118946878 NA other downstream 2425055 21744425 ~ 21755710 (-)
G235092 LOC100194668 other downstream 2437145 21738845 ~ 21743411 (-)
G237832 NA other upstream 337255 24521219 ~ 24521544 (-)
LOC110515154 LOC106605289 other upstream 585598 24767049 ~ 24799511 (-)
LOC110515208 LOC106581894 other upstream 752552 24936516 ~ 25052970 (-)
LOC110515384 LOC106582009 other upstream 1015124 25171287 ~ 25236536 (-)
LOC110515750 LOC106582146 other upstream 1639392 25822812 ~ 25825108 (-)

Expression


Co-expression Network