G237714 (LOC106605309)


Basic Information

Item Value
gene id G237714
gene name LOC106605309
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24300193 ~ 24300653 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU271638
ACTATTTCCGCCACATGTTCTGAGCTGGGCACGGGGACGCATTCTGTTATGTTGCAGCCTCGTCCTTTCGTCTCACTTGAACCCTCGTACAGGACACATAACTTGTTCTTCCCTTGCAAAAGCCCTGTGTCACCACCACCTCCGCCAATATTATTGGTATGGTTGTgatggttattgttattgttactcCGATCCTGTACTCCCGTTCCAGGAGCCCCGCCACCGTCCTCGCCTTCACCAAGCCCCAGTAGAGACAGCTGGCCCAGCGCGACCCTCAGGGCACGGGAGTCGTCTTCTTCCTCGTCGGGTGGCACTAGGAGACCTTCGCTTCCGAACCCGGAGCCGGCTAGATCCCCGCCGTAGCCCCCATTTTTCTCCATGATCCCTGCTAGAACCAGCAGGCTAGGCATGGCTAACAAAAGAGTGTGAGACAAAGACAGGGGAAAGAGACTGGAGAAACA
>TU271640
TTCTGTTATGTTGCAGCCTCGTCCTTTCGTCTCACTTGAACCCTCGTACAGGACACATAACTTGTTCTTCCCTTGCAAAAGCCCTGTGTCACCACCACCTCCGCCAATATTATTGGTATGGTTGTgatggttattgttattgttactcCGATCCTGTACTCCCGTTCCAGGAGCCCCGCCACCGTCCTCGCCTTCACCAAGCCCCAGTAGAGACAGCTGGCCCAGCGCGACCCTCAGGGCACGGGAGTCGTCTTCTTCCTCGTCGGGTGGCACTAGGAGACCTTCGCTTCCGAACCCGGAGCCGGCTAGATCCCCGCCGTAGCCCCCATTTTTCTCCATGATCCCTGCTAGAACCAGCAGGCTAGGCATGGCTAACAAAAGAGTGTGAGACAAAGACAGGGGAAAGAGACTGGAGAAACA
>TU271637
ACTATTTCCGCCACATGTTCTGAGCTGGGCACGGGGACGCATTCTGTTATGTTGCAGCCTCGTCCTTTCGTCTCACTTGAACCCTCGTACAGGACACATAACTTGTTCTTCCCTTGCAAAAGCCCTGTGTCACCACCACCTCCGCCAATATTATTGGTATGGTTGTgatggttattgttattgttactcCGATCCTGTACTCCCGTTCCAGGAGCCCCGCCACCGTCCTCGCCTTCACCAAGCCCCAGTAGAGACAGCTGGCCCAGCGCGACCCTCAGGGCACGGGAGTCGTCTTCTTCCTCGTCGGGTGGCACTAGGAGACCTTCGCTTCCGAACCCGGAGCCGGCTAGATCCCCGCCGTAGCCCCCATTTTTCTCCATGATCCCTGCTAGAACCAGCAGGCTAGG
>TU271639
TTCTGTTATGTTGCAGCCTCGTCCTTTCGTCTCACTTGAACCCTCGTACAGGACACATAACTTGTTCTTCCCTTGCAAAAGCCCTGTGTCACCACCACCTCCGCCAATATTATTGGTATGGTTGTgatggttattgttattgttactcCGATCCTGTACTCCCGTTCCAGGAGCCCCGCCACCGTCCTCGCCTTCACCAAGCCCCAGTAGAGACAGCTGGCCCAGCGCGACCCTCAGGGCACGGGAGTCGTCTTCTTCCTCGTCGGGTGGCACTAGGAGACCTTCGCTTCCGAACCCGGAGCCGGCTAGATCCCCGCCGTAGCCCCCATTTTTCTCCATGATCCCTGCTAGAACCAGCAGGCTAGG

Function

NR:

description
PREDICTED: RNA-binding protein MEX3A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU271638 False 461 lncRNA 0.53 1 24300193 24300653
TU271640 False 420 lncRNA 0.55 1 24300193 24300612
TU271637 False 407 lncRNA 0.42 1 24300247 24300653
TU271639 True 366 lncRNA 0.56 1 24300247 24300612

Neighbor

gene id symbol gene type direction distance location
LOC110514890 LOC106580679 coding downstream 13575 24259081 ~ 24286618 (-)
gpatch4 gpatch4 coding downstream 78466 24217505 ~ 24221727 (-)
LOC110514831 nes coding downstream 101380 24189209 ~ 24198813 (-)
LOC118947709 NA coding downstream 221340 24067930 ~ 24078853 (-)
LOC110514815 LOC106580773 coding downstream 319893 23975874 ~ 23980300 (-)
LOC110514944 LOC106580659 coding upstream 12902 24313555 ~ 24323816 (-)
LOC110514960 raa2a coding upstream 20091 24320744 ~ 24330914 (-)
mapip LOC106580651 coding upstream 30873 24331526 ~ 24336143 (-)
LOC110514914 LOC106605242 coding upstream 36071 24336724 ~ 24342873 (-)
LOC110514995 LOC106580635 coding upstream 60830 24361483 ~ 24378365 (-)
G237705 NA non-coding downstream 14403 24285557 ~ 24285790 (-)
G237703 NA non-coding downstream 15764 24284199 ~ 24284429 (-)
G237701 LOC106605310 non-coding downstream 43728 24255885 ~ 24256465 (-)
G237663 NA non-coding downstream 100249 24199648 ~ 24199944 (-)
G237594 NA non-coding downstream 198092 24101852 ~ 24102101 (-)
G237723 NA non-coding upstream 5029 24305682 ~ 24309011 (-)
G237732 NA non-coding upstream 48453 24349106 ~ 24349359 (-)
G237828 NA non-coding upstream 213458 24514111 ~ 24514321 (-)
G237829 NA non-coding upstream 214542 24515195 ~ 24515433 (-)
G237837 NA non-coding upstream 226131 24526784 ~ 24526988 (-)
G237657 LOC106605316 other downstream 116229 24180556 ~ 24183964 (-)
LOC110514600 ensa other downstream 520058 23771511 ~ 23780158 (-)
G237047 NA other downstream 1111162 23157109 ~ 23189031 (-)
G235881 NA other downstream 1725204 22573833 ~ 22574989 (-)
LOC118946878 NA other downstream 2544692 21744425 ~ 21755710 (-)
G237832 NA other upstream 220566 24521219 ~ 24521544 (-)
LOC110515154 LOC106605289 other upstream 468909 24767049 ~ 24799511 (-)
LOC110515208 LOC106581894 other upstream 635863 24936516 ~ 25052970 (-)
LOC110515384 LOC106582009 other upstream 898435 25171287 ~ 25236536 (-)
LOC110515750 LOC106582146 other upstream 1522703 25822812 ~ 25825108 (-)

Expression


Co-expression Network