G238033


Basic Information

Item Value
gene id G238033
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24854769 ~ 24885461 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU271991
tcacattcccagtgggtcagacgtttacatacacattagtatttggtagcattgcctttaaattgtttaacttgggtcaaacacttcaggtagccttccacaagcttcccacaataagtttggtgaattttggcccattcctcctgacagagctggtgtaacagtcaggttggtaggcctccttgctcgcacacgctttttcagttctgcccacagattttctataggattgaggtcagggctttgtgatggccattccaataccttgactctgttgtccttaagccatttttccacaactttggaagtatgcttggggtcattgttcatttggaagacccatttgggaccaagctttaacttaacttcaagactgatgtcttgagatgtttcttcaatacaTCTacaattttccaccctcatgatgccatctattttgtgaagtgcaccagtccctcctgcagaaaagcacccccacaacatgatgctgccacccccatgcttcacggttgggatggtgttctttggcttgcaggcctccccctttttcctccaaacataatgatggtcattatggccaatcagttctatttttgtttcatcagaccagaggacatttctccaaaaagtacaatctttgtccccatgtgcagttgcaaaccgtagtctggcttttttatagcagttttggagcagtggctacttccttgctgagcagcctttcaggttatgtcaatataggactcatttcactgtggatatagatacttttgtacttgtttcctccagcatcttcacatggttctttgctgttgttctggaattgatttgcacttttcgcaccaaagtacgttcatctctaggagacagaatgcgtctccttcttgagcggtatggcAGCTATgtggccccatggtgtttatatttgggtactattgtttgtacatatgaaagtggtaccttcaggcatttggaaattgctcccaaggatgagtcAGACTCGTGGAGGACTACAATTTTTttccgaggtcttggctgatttcttttgattttcccatgatgtcaagcaaagagggactgagtttgaagataggcctttatatacatccacaggtacatctccaatttactcaaataatgtcaattagcctatcaaaagcttctaaagccatgacataattttctggaattttccaagctttttaaaggcacagtcaacttagtgtatgtaaacttctgacccactggaattgtgatacagtgaagtataagtgaaataatttgtctgtcaacaattgttggaaaaattacttgtgtcatgcacaaagtagatgtcctattagacttgccaaaactatagtttgttaacagaaaatgtgtggaatggttgaaaaatgagttttaatgacttcaactgtatattattccCAACACATTTTGATATGCCGGCCAAAGGTGTTCAGGTTAATTGGGACAGGAGGTTTATAGCAACAGCACCCAATGCTAATTAGTTATGATGACATAAATTAACCAGATGGATTAGTTCTTTCAAAGAATTCACACATTTTAATCTTAAAATGATTACACAACGCCCTCTAGTTTGGGAGTTATAAGCACTGTGACAACCAACCCTGGTCTCCCCTACATACTGGACACAGAGCTACATGATAAAATAATGACATGTGTGTTAGGTCTAGCGTGGTACATGTTAGTGCTATTATGTCAAGAAATGATTATATGATGTTGGGGATGTAATTAATCATTTTTCCTCATCTaaaacatttacaacaataaTAATGTAAATATGCAGGTAATTCCCAGAAAAAAGGAAACACTTAAGTatatgagggatacaaagtatgtTGAAAGcatgtgcttccacacaggtgtggttcctgagttaattaagcacttaatatcccatcatgcttagggtcatgtataaaaatgcccagtttcccattattttggctaccatagcAAGTAGAGatttcagtgactttgaaagaggggtctcaaaggagcataagggttttaaagggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctccgtcaccagatctcaacccaattgaacacttatgggagaatCTGGAGCGGCACCtaagacagcgttttccaccaccatcaacataacaccaaatgatggaactTCTCGTGGAAGAAtagtgtcgcatccctccaatagagttccagacacttgtagaatctatgccaaggcataGAAGCTGTTCTGGaagctcgtggtggcccaacaccctattaagacactttacgttggtgtttcctttattttggctgtACATTACCTGTACATATGCTTCACACTTTACAACTGAACAGAAACAGTAGGTGCTGTTATATATACTACAAGGAATAAATACTCAAGAGATACCACACTCTTTTTCGAGGATACATGTAAACAATAGCCACTGACAATGTTATACCAGCATGGGGTGAGCGGTGTATTGGTTTGCCATAAACCTGCAATGACCACCACGATACCACATGAATACGACAGTGCCAAGAGCCTTTGACCTCCACTGACCACATCCCCATTCCTGGGAGGTGAGATGACATCACTTATTCAGTTCTGTTGTGCACCATCATCTAAGATTTCTTCCATTAGATAGCTGTTATAAACAAGGTCATTTGGAATGTCCTATCTCCCTAAAGCATGTGTATGTTAGGTAGAATTTCAGTAATTCTCTGACGTTTAAACAGCACGTAATGTTTCAAAAAAATGCATCCAATGACCATTTCTGTATGTTGTAGAAGTAAAAAATAAGAGTACTCCAAAGAACAATTCAAGTGACTGGGCATTCACAGGAACACAAACTGCGAAGAACCATGAAGTTTCCATGGAAACGTACCTCTGCAAAATGTCACCTGTTTTTTAATCATAGACATGGTACAGTGCTGTAGCTTTCAGgtacacacttagaaaaaaagggttccaaaagggttctccggCTGTGCCCATAGGAGaaacctttttggtttcaggtagaaccctttttgactCCAGATATAACTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU271991 True 3067 lncRNA 0.59 4 24854769 24885461

Neighbor

gene id symbol gene type direction distance location
LOC110515164 LOC106581855 coding upstream 35525 24817575 ~ 24819244 (+)
LOC110515127 LOC106581815 coding upstream 136140 24711483 ~ 24718629 (+)
LOC118947812 m4a8a coding upstream 502416 24342562 ~ 24352353 (+)
LOC110514930 LOC106605309 coding upstream 541357 24299707 ~ 24313412 (+)
LOC110514864 LOC106580670 coding upstream 595222 24226912 ~ 24261294 (+)
LOC118948035 LOC106605281 coding downstream 89165 24974626 ~ 24976484 (+)
LOC110515267 LOC106605278 coding downstream 190878 25076339 ~ 25101218 (+)
LOC110515353 pbx2 coding downstream 227178 25112639 ~ 25119442 (+)
LOC110505167 tap1 coding downstream 241718 25127179 ~ 25135494 (+)
LOC100136302 LOC106581989 coding downstream 252295 25137756 ~ 25147306 (+)
G238028 NA non-coding upstream 45889 24808437 ~ 24808880 (+)
G238052 LOC106581836 non-coding upstream 77881 24776660 ~ 24776888 (+)
G238051 NA non-coding upstream 78543 24775975 ~ 24776226 (+)
G237985 otud7b non-coding upstream 84243 24769614 ~ 24770526 (+)
G237984 NA non-coding upstream 89417 24764810 ~ 24765352 (+)
G238029 NA non-coding downstream 18838 24904299 ~ 24905517 (+)
G238129 NA non-coding downstream 52143 24937604 ~ 24953475 (+)
G238238 NA non-coding downstream 223661 25109122 ~ 25110592 (+)
G238196 LOC106581966 non-coding downstream 234885 25120346 ~ 25120658 (+)
G238194 NA non-coding downstream 235411 25120872 ~ 25121188 (+)
G238050 NA other upstream 78824 24775279 ~ 24775945 (+)
G238047 NA other upstream 88406 24765666 ~ 24766363 (+)
G238034 NA other upstream 104386 24749405 ~ 24750383 (+)
G236753 NA other upstream 799102 24055319 ~ 24055667 (+)
LOC110514733 LOC106580799 other upstream 925682 23908750 ~ 23932207 (+)
G238540 LOC106582009 other downstream 309826 25195287 ~ 25199234 (+)
G239026 NA other downstream 655308 25540769 ~ 25541613 (+)
G239697 LOC106582257 other downstream 1328181 26213642 ~ 26220183 (+)
G239752 meox2 other downstream 1441947 26327408 ~ 26328331 (+)
G240244 NA other downstream 2165725 27051186 ~ 27051954 (+)

Expression


Co-expression Network