G238129


Basic Information

Item Value
gene id G238129
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24937604 ~ 24953475 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU272089
ACAAAAAATACATATCACATCTTAATTTAAGAAGTTAATTATTTGTTTATTATTCATTTGTTTAAGTATTTCTATCTCCAAGATTCACCCACCCGAAAAATATAAATTCCGGCTTATTCAAAAATGAAATGAAGGAATTGTTATTGACCGCATCAAAGGAATGAATCAACAAAATCAAAGTGGCAATAATCATAATCATTATTACAATAATAGTTAAATCATCAGAATATCCACATTCATAACAAATCCATGTACAATGGCAATACACTCTTCAATATCACTCTTTCCATTAATATACACAAATCCCCGAATGTCTGTCCtttttaaaacaaaaatagaGGGGTTGGGGGACTATGGCTTGTCAAAGGGTATGACTATGAGTGAACTGTGGGGTTGAAGGTTCAAGGGTGAGGGAGGGTTGGCGAGTTGGAGGCACACTTAATAGAACTTGAAGAAATGGCTAATAACATGGTGTTACTTGCATGGAAGAGTTGCTTCACAAGTAACAGTGTGATCTGAACCAAAGGTTCAGCCTGACAGAGGGGTCTATGAGAGGCAGAGTTCGGGGAACTAAATTGGAAAGATTAGATAAGGGTTGTCTGGATAATTATATACATCAGAATGACAACCATTGCAAACATTTAATGTAGAGAACGTAAAACTTAAATCAAATAACAAGGAAGAATCCTAATAGTTACAGGAATTTTTAAAAAGGAGATGGAGGTCACTGGAAATATTATCTTAGTtattctatatactgtatatgtacaaaCATTGCTTGGTCACCCAAATatcatttttaaaaatgcctcagttgATGAGAAAATGAGTGCAAGCCAGAGATTGTTTTGAGAGGCATAATTAGGTGTGTAGGTGTTCAGAGGTGTCAGATTGGTCAGTGTCTGCACAGAAAGTGCATCCCAGACAGTTGTCCTTTAAATTGCCAGTGTGAACCTCTCCACTCCAACATTTCTCTTTGAGGAGTCAAATATGTCATTtacgagaaagggagagagattagaggaTCGAGGAAAAAACTGTACACCCTGCGTATACAAAcaaactgtatatacacatagacatactatatatacacacacatatccagtatatacacaacaactgtacacacactgtatatacacacacattcaatcACTTAAAAGGTATTAACCTCTAATCTCTCGCTCTTTTGATGTGTCACTTTTCAGTGGTCAGGGCGAAGGAGGGCACAGGGTTTTATTTAGCTTCTGTGTCAGTGGAGTCCATACAAAGAAATCAAATGGAAGTTATACAGAAACTAGGCTCCAGAATTCGGTCTCACCACACTGGAAAAACATGATAAACTCGCGTCTGCCCCACTAAGCTTACATCAGAGACAGAAATAGGAAAACAAAAACGTGATGGTAAGGATGTCCTCTTCTAAGGAGTTTTAGATCGTCTGTAAAATGGAGAGCTCCCCAGCGATTGTCAAGTAGAGAAACAACATCCATCCTCTTATCTCTCTTCCAGGGATTACAAGAGAGAAGTGGAGGGGTACAGGTCACTGCAACGTGCAAATCCTTGTGAGGGGAGCAGGTAAAACAACAGTTTGTGTTTTTTTCCGTCACAATCCCAGGGCAATCTTTCTCCACAAAAGGGTAATGTTCCATAAGATTGTCTTAAGAAAAATCAGTTGATACAAAATGGATCATTTCTGGACTGTCATGAGATACTAGAGTCTTGTCATTATCAAGAAATAAACATTTCCGCAGGAAGATTTCCAATGAATAGTTTTTGTAGTACTACGGTAAGAATAAGCATTATTATAGAAATATAAATCATAGCATTGTCTACATTTTCCAAAGTTTTAATTGAAGCAATATTTTGTTTTGTAGCAGTTTCACTTGTAATAGGCTGTGCATAATTAGTTTCCTTTAAATGTAAAACGAATAGAGATAAAGAAGAGAGAACAAAACCGAAACCATGGGAGATATGAACAGGAGCAGAAAAGTCTAAAAGGGGTGGACATAAACTGAGGTGGTTGAAAATGGTTAAGAATAGATAGAAAGAGAAATGGGTAGATAGTGGGTGGACTGTAGAAAATGTTAGGAAGGAAAAATGCAAGAAACATTGTGAGATCATTGAAAAATGTAAGGAAAGAAAGATTACAGCACCTTTGAAATGCATCTTACACACAGTAGCTCTCCCTCATTTCATTTACTGCTCAATCCCAAAAAAGGTTAATATCATGTCAATCTGCATAGCTGTTCTTCACATGCTTGATGAGCCAACAAAACCATTTCCCGAGATTGACACGTCTTTAAAAGAAAATCAAACATCTTATCACAAGCATCAAATACAGATTGTCCAGCCatccaatcagagagagagggcccAAGTAAAGTAGGATAAATAACACAGCAGATCCTTACATGGTCAGCTGTGGCTCTGGACTATCCTTAAGGTCAGGAGAATTGGACCAATGGCCCAACTTCTCCCTTTGTCAGCCAATCGCATCACGAGAGAGCGCTCTTGATATATGGCCAGGCCATGCGGGCTGCCCATGTTGCCTCAGCCAATTAGGTTCCAGATTGTCCTCCACGAAGCTGCGTGATTGGCTAAGAGGAGAaaaggaaaacagagagagaaggaacggGGAGGTGCTTGATGAGTTGCTATCCAATCATagccatcccactgggcacagacgtcatttcaaTGTCTAATTTTGATTTACCTTTGGTTGACTTGTCAACTAAAGTGAATTTAatccatgtcattggatttaggttaaaagcaGGGTGAAAAAAATACTACGTTCCCTAACGTCCCTAATGAAATTCATAACTACATCACATTTAGCCTTTTTGTTTAAATGATGTGGAATCactgttgattcaaccagtttttgcccagtgggatagATCTTGTAATAGATGGACCAACCACTGTATCTGATGGCAGTCACTCCAAAGATGGATTCATCTCTGTCAGTTTGCGTTCAGCTCTGAGGCAATTATTTGTTTACCTGAGTCTCTCAATTCTGCGTCTCTGAGGTATATTAATGGCAATGCTCATATATCAACCAGTGACCCTGTATAGTCCCACATCTTTACTCAATGCAGATGTAAAGCCCTAGCTGCTTTAAAACACATTTTATTACTGATATGAATGTTTTGGCACTCGAAAGGTAGCCCTATTAGCTGACTTAAGCTAACTACATCAAACTCTCCCTGTTAATAATCACATTTGGTTAACTTTTAATTCAACACTCATAGCTAaatctctctcatatctctgaATCTCACCCACTCTACGTTATGGCTAATCCCCTAGTACTGATTTGACACAGCATTGGCAGAGCCATTTTGACCCTATACACTAAGTGccgaatcctaacttgagatctgCAAGTTAAACTCAAACTTACTCGTAAAGCATGATGCCAATGGGAGAACTGCAAAAATATAAATCAAGTTAGGATTTGGCCCTTAGTAAATTGACTCTTAATCAAATAAAAGAGTTGAATAAGACTGACGTTGGGTTCTGCAAAACCAGGACTGTCTGAAGCATGTTAATGCTCTTGAGACGCTAAGCCAGCTAAGGAATGTTATCCAACTAGTTATAAAGCACCACCAGTGTGAATCTTAAAGGGCCAAAATAAACCCAAATTCACATCTAAACAAAGACAAGTTATACACAAAACAAGAGGACATGACAACACAGTATAACAGTATTCACAGACAGGTGATATCTGAACAGGTGACACAAAGCAATCAATTCCTTTAAGTGCACGGTGtaacatattttagatttgaaATACTCCAAACTAACAATGCCCCCAACAAACTTTGTTTTCTCAAAATGTTGTTACATCAGCATTCATCATGCTCAGCTACGTTAACTTAAAATAGTCCCTCGAAACGACATGAAGAAAGTCTATGCCACATATACATTTGGCTGAGCACTGTTTGACTACTGGCCAAAATGTGATTATCTGAGACCCAGGCACTTAAGGCTAGACTTAACTGGCTACCCCAAAATAAGAATCAAATAAATCGGTTTTGGTACTAAACAGAAAAAGCCATGACAACAATTTTGGAAGTGTACTAGGTGTTACAAGTGACTACGTTATATGCCAGGACACTGAAGGTCCAAAAATAGCATTCCTTTTATATTTTCAACCACTTCAAATTGCCGGTAAACTTTTTACCTGACAACTTTGCTATTGTCTCACTTGGTTCAAGCACCCTACTGGACCCAGTTCCCACTCCATTAAACAATTGCACACATAGGGACACGACACAcacataacaaacaaacagacaaatacaTAAAAGAAATAGGCTACCTTGACAataacagacagagtgagagagacagacatacagaccgTGGGAAACATGAAAGGCAACGCTATGACACACACACTTGATTTGGAGATGGCACTGTTTGTGTCTGGAGCACCAGTTGATCACACACAGGTTCTGAGATTGAGAAGAGAAAACATTGCACGAGTCCAGTCCACAAATGGGAAGTCCCTTAATTGACACATTTTTGAAAACATCACACACTTTCCTTAGGCCATAGGCCATGTCTGTGAAATCCCAAAAATTAAACCGTATTCTGCTTGTTCTGCACTCTGTAGTTAGTCTGCATTTTAAAAAGCATAGTTATTTTGGGATCTTGATAAGACTGCTTATGTACTATCATCAAATAATATAATCTTTCTGTCAATATCATCTCCGCCTGTTACTTGAAAACCCTGTTAAAATACACTCAAAGGCACTAAGGAAACCAAACTACAAAGCCAGATGACCACATCTCTACCAATGAAATTTGAGAGCTGGAGTTTTCAGGACAGGAAATGACAAGACCTTTATCGATGGAATTATGGGATACTACACGCATGTATATAGTAGGATGCTATTGGCTACTGCGAAGTCTTTAGGGAGTGAGATGTTATATAGTGTTTGCTTACGGTCTATATTTGATTAAACAAACACACAACGCAAAATCTCACGTAGTTGCTTGGTTTGGTGATTAGGCCTATACCAGTGTTTTATAGGCTCTATAGTTTGATCGATTGAAACAGTACATGAGGATCCCACAATGTCAGCGATAACTAAAAGGTATCATTATCTTGTCCTGCAAGACAGATACTGACCAAAGCCCAGTTTGAGCATGACGGAAATGAGGTCCATTGGAAAGCCCTTTTGTTGTCTTGTGTGATAATGCTGAACGTACTGTACAGTTAAATGTACAATGATTGCTGCCCCCTACAcatttcttctctctctggtTTGAGTACACATAAAATAAACTGGAAAGATTGCAGTCATCTCATCATCCTCAAAAAAGGAAGGAAATGTGGCAAGACTTTTTTAtttgtgtcttctctctctgatttggttttgtgttgtttttgacctgctccctctcctctatgCCCAGTCCTGCTGTTGTAGTGCTCTCAGCTGCCTCCGTGCTTGTCACTGGGGAGGATGTAGGGTTGCCACGGAGCTCTCCATTCTGGGGTGGATTGGGATGGAGATGAggagtggggggaggaggaggGAGATGATGAGTGGCTGGCTAAAAGCATGGACCGTGAGACATTGAGTGTGGTTGCTGGAGATGTTG

Function

NR:

description
PREDICTED: ras/Rap GTPase-activating protein SynGAP-like isoform X9

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU272089 True 5625 lncRNA 0.47 2 24937604 24953475

Neighbor

gene id symbol gene type direction distance location
LOC110503966 LOC106581868 coding upstream 61420 24847527 ~ 24876184 (+)
LOC110515164 LOC106581855 coding upstream 118360 24817575 ~ 24819244 (+)
LOC110515127 LOC106581815 coding upstream 218975 24711483 ~ 24718629 (+)
LOC118947812 m4a8a coding upstream 585251 24342562 ~ 24352353 (+)
LOC110514930 LOC106605309 coding upstream 624192 24299707 ~ 24313412 (+)
LOC118948035 LOC106605281 coding downstream 21151 24974626 ~ 24976484 (+)
LOC110515267 LOC106605278 coding downstream 122864 25076339 ~ 25101218 (+)
LOC110515353 pbx2 coding downstream 159164 25112639 ~ 25119442 (+)
LOC110505167 tap1 coding downstream 173704 25127179 ~ 25135494 (+)
LOC100136302 LOC106581989 coding downstream 184281 25137756 ~ 25147306 (+)
G238029 NA non-coding upstream 32087 24904299 ~ 24905517 (+)
G238033 NA non-coding upstream 52143 24854769 ~ 24885461 (+)
G238028 NA non-coding upstream 128724 24808437 ~ 24808880 (+)
G238052 LOC106581836 non-coding upstream 160716 24776660 ~ 24776888 (+)
G238051 NA non-coding upstream 161378 24775975 ~ 24776226 (+)
G238238 NA non-coding downstream 155647 25109122 ~ 25110592 (+)
G238196 LOC106581966 non-coding downstream 166871 25120346 ~ 25120658 (+)
G238194 NA non-coding downstream 167397 25120872 ~ 25121188 (+)
G238197 NA non-coding downstream 169177 25122652 ~ 25122955 (+)
G238198 NA non-coding downstream 169658 25123133 ~ 25123346 (+)
G238050 NA other upstream 161659 24775279 ~ 24775945 (+)
G238047 NA other upstream 171241 24765666 ~ 24766363 (+)
G238034 NA other upstream 187221 24749405 ~ 24750383 (+)
G236753 NA other upstream 881937 24055319 ~ 24055667 (+)
LOC110514733 LOC106580799 other upstream 1008517 23908750 ~ 23932207 (+)
G238540 LOC106582009 other downstream 241812 25195287 ~ 25199234 (+)
G239026 NA other downstream 587294 25540769 ~ 25541613 (+)
G239697 LOC106582257 other downstream 1260167 26213642 ~ 26220183 (+)
G239752 meox2 other downstream 1373933 26327408 ~ 26328331 (+)
G240244 NA other downstream 2097711 27051186 ~ 27051954 (+)

Expression


Co-expression Network