G238196 (LOC106581966)


Basic Information

Item Value
gene id G238196
gene name LOC106581966
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25120346 ~ 25120658 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU272167
AGGCGAAGACATATCCCGATGCCCTATGACACCAGAGAAGGAGGCACTTCTCCCAGGGAGCCCAGGGGAATTCACCCATTGGCTATACAGCAAGGCACGCTCATCCCACAGCATATCATTGGCTTGCTCCATAGGAATAGGCCCTCTCTGAACCCTGTGAGCCAATAGGAGCTCCAAGACTTGATGATGCATGCCCTCTCGGGCAACATCCAGTGCCCGGCGTCCTCTGCGATCAGACAGATCCTGATTGGCCCCGTTTAGGAGCAGGAACCGGGCGGTGTCGTAGCAACCGTGGAGGGCGGAGAGGAACAGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU272167 True 313 lncRNA 0.57 1 25120346 25120658

Neighbor

gene id symbol gene type direction distance location
LOC110515353 pbx2 coding upstream 904 25112639 ~ 25119442 (+)
LOC110515267 LOC106605278 coding upstream 19128 25076339 ~ 25101218 (+)
LOC118948035 LOC106605281 coding upstream 143862 24974626 ~ 24976484 (+)
LOC110503966 LOC106581868 coding upstream 244162 24847527 ~ 24876184 (+)
LOC110515164 LOC106581855 coding upstream 301102 24817575 ~ 24819244 (+)
LOC110505167 tap1 coding downstream 6521 25127179 ~ 25135494 (+)
LOC100136302 LOC106581989 coding downstream 17098 25137756 ~ 25147306 (+)
LOC110515374 NA coding downstream 35718 25156376 ~ 25161150 (+)
vmo1b vmo1 coding downstream 41582 25162240 ~ 25165365 (+)
LOC110515419 LOC106582023 coding downstream 142215 25262873 ~ 25270428 (+)
G238238 NA non-coding upstream 9754 25109122 ~ 25110592 (+)
G238129 NA non-coding upstream 166871 24937604 ~ 24953475 (+)
G238029 NA non-coding upstream 214829 24904299 ~ 24905517 (+)
G238033 NA non-coding upstream 234885 24854769 ~ 24885461 (+)
G238028 NA non-coding upstream 311466 24808437 ~ 24808880 (+)
G238194 NA non-coding downstream 214 25120872 ~ 25121188 (+)
G238197 NA non-coding downstream 1994 25122652 ~ 25122955 (+)
G238198 NA non-coding downstream 2475 25123133 ~ 25123346 (+)
G238195 NA non-coding downstream 2808 25123466 ~ 25123783 (+)
G238199 NA non-coding downstream 4419 25125077 ~ 25125397 (+)
G238050 NA other upstream 344401 24775279 ~ 24775945 (+)
G238047 NA other upstream 353983 24765666 ~ 24766363 (+)
G238034 NA other upstream 369963 24749405 ~ 24750383 (+)
G236753 NA other upstream 1064679 24055319 ~ 24055667 (+)
LOC110514733 LOC106580799 other upstream 1191259 23908750 ~ 23932207 (+)
G238540 LOC106582009 other downstream 74629 25195287 ~ 25199234 (+)
G239026 NA other downstream 420111 25540769 ~ 25541613 (+)
G239697 LOC106582257 other downstream 1092984 26213642 ~ 26220183 (+)
G239752 meox2 other downstream 1206750 26327408 ~ 26328331 (+)
G240244 NA other downstream 1930528 27051186 ~ 27051954 (+)

Expression


Co-expression Network