Gene
RNA
| Item | Value |
|---|---|
| gene id | G238194 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 25120872 ~ 25121188 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| neurogenic locus notch homolog protein 1-like isoform X3 |
| id | description |
|---|
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU272165 | True | 317 | lncRNA | 0.51 | 1 | 25120872 | 25121188 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110515353 | pbx2 | coding | upstream | 1430 | 25112639 ~ 25119442 (+) |
| LOC110515267 | LOC106605278 | coding | upstream | 19654 | 25076339 ~ 25101218 (+) |
| LOC118948035 | LOC106605281 | coding | upstream | 144388 | 24974626 ~ 24976484 (+) |
| LOC110503966 | LOC106581868 | coding | upstream | 244688 | 24847527 ~ 24876184 (+) |
| LOC110515164 | LOC106581855 | coding | upstream | 301628 | 24817575 ~ 24819244 (+) |
| LOC110505167 | tap1 | coding | downstream | 5991 | 25127179 ~ 25135494 (+) |
| LOC100136302 | LOC106581989 | coding | downstream | 16568 | 25137756 ~ 25147306 (+) |
| LOC110515374 | NA | coding | downstream | 35188 | 25156376 ~ 25161150 (+) |
| vmo1b | vmo1 | coding | downstream | 41052 | 25162240 ~ 25165365 (+) |
| LOC110515419 | LOC106582023 | coding | downstream | 141685 | 25262873 ~ 25270428 (+) |
| G238196 | LOC106581966 | non-coding | upstream | 214 | 25120346 ~ 25120658 (+) |
| G238238 | NA | non-coding | upstream | 10280 | 25109122 ~ 25110592 (+) |
| G238129 | NA | non-coding | upstream | 167397 | 24937604 ~ 24953475 (+) |
| G238029 | NA | non-coding | upstream | 215355 | 24904299 ~ 24905517 (+) |
| G238033 | NA | non-coding | upstream | 235411 | 24854769 ~ 24885461 (+) |
| G238197 | NA | non-coding | downstream | 1464 | 25122652 ~ 25122955 (+) |
| G238198 | NA | non-coding | downstream | 1945 | 25123133 ~ 25123346 (+) |
| G238195 | NA | non-coding | downstream | 2278 | 25123466 ~ 25123783 (+) |
| G238199 | NA | non-coding | downstream | 3889 | 25125077 ~ 25125397 (+) |
| G238243 | NA | non-coding | downstream | 5173 | 25126361 ~ 25126677 (+) |
| G238050 | NA | other | upstream | 344927 | 24775279 ~ 24775945 (+) |
| G238047 | NA | other | upstream | 354509 | 24765666 ~ 24766363 (+) |
| G238034 | NA | other | upstream | 370489 | 24749405 ~ 24750383 (+) |
| G236753 | NA | other | upstream | 1065205 | 24055319 ~ 24055667 (+) |
| LOC110514733 | LOC106580799 | other | upstream | 1191785 | 23908750 ~ 23932207 (+) |
| G238540 | LOC106582009 | other | downstream | 74099 | 25195287 ~ 25199234 (+) |
| G239026 | NA | other | downstream | 419581 | 25540769 ~ 25541613 (+) |
| G239697 | LOC106582257 | other | downstream | 1092454 | 26213642 ~ 26220183 (+) |
| G239752 | meox2 | other | downstream | 1206220 | 26327408 ~ 26328331 (+) |
| G240244 | NA | other | downstream | 1929998 | 27051186 ~ 27051954 (+) |
