Gene
RNA
| Item | Value |
|---|---|
| gene id | G238494 |
| gene name | tap1 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 25129102 ~ 25129653 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| tap1 | Predicted to enable ABC-type peptide transporter activity. Predicted to be involved in peptide transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in several diseases, including MHC class I deficiency; autoimmune disease (multiple); bronchial disease (multiple); diffuse scleroderma; and lung disease (multiple). Orthologous to human TAP1 (transporter 1, ATP binding cassette subfamily B member). |
| description |
|---|
| antigen peptide transporter 1-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU272527 | True | 218 | lncRNA | 0.54 | 2 | 25129102 | 25129653 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| notchl | LOC106581966 | coding | downstream | 3660 | 25119183 ~ 25125442 (-) |
| LOC110515302 | LOC106581964 | coding | downstream | 17986 | 25107822 ~ 25111116 (-) |
| LOC110515290 | LOC106581956 | coding | downstream | 22466 | 25101393 ~ 25106636 (-) |
| LOC110515238 | LOC106581944 | coding | downstream | 56438 | 25058594 ~ 25072664 (-) |
| LOC110515208 | LOC106581894 | coding | downstream | 76132 | 24936516 ~ 25052970 (-) |
| LOC110515384 | LOC106582009 | coding | upstream | 41634 | 25171287 ~ 25236536 (-) |
| LOC110515443 | LOC106605270 | coding | upstream | 336198 | 25465851 ~ 25521829 (-) |
| LOC110515528 | LOC106582056 | coding | upstream | 438386 | 25568039 ~ 25575807 (-) |
| LOC110503974 | NA | coding | upstream | 454288 | 25583941 ~ 25589424 (-) |
| LOC110515569 | LOC106605268 | coding | upstream | 467051 | 25596704 ~ 25643498 (-) |
| G238414 | NA | non-coding | downstream | 197654 | 24928799 ~ 24931448 (-) |
| LOC110515154 | LOC106605289 | non-coding | downstream | 359771 | 24767049 ~ 24799511 (-) |
| LOC110515141 | LOC106581821 | non-coding | downstream | 363740 | 24727603 ~ 24765483 (-) |
| G238316 | NA | non-coding | downstream | 409133 | 24719736 ~ 24719969 (-) |
| G238315 | LOC106581815 | non-coding | downstream | 410544 | 24717738 ~ 24718558 (-) |
| G238509 | NA | non-coding | upstream | 19897 | 25149550 ~ 25149823 (-) |
| G238588 | NA | non-coding | upstream | 48983 | 25178636 ~ 25178846 (-) |
| G238593 | NA | non-coding | upstream | 59406 | 25189059 ~ 25189309 (-) |
| G238623 | NA | non-coding | upstream | 108019 | 25237672 ~ 25237878 (-) |
| G237832 | NA | other | downstream | 607558 | 24521219 ~ 24521544 (-) |
| G237657 | LOC106605316 | other | downstream | 945138 | 24180556 ~ 24183964 (-) |
| LOC110514600 | ensa | other | downstream | 1348967 | 23771511 ~ 23780158 (-) |
| LOC110515750 | LOC106582146 | other | upstream | 693703 | 25822812 ~ 25825108 (-) |
| G240409 | NA | other | upstream | 1439448 | 26569101 ~ 26569522 (-) |
| G240464 | NA | other | upstream | 1544939 | 26674592 ~ 26675033 (-) |
| LOC110516631 | LOC106582601 | other | upstream | 1941402 | 27070914 ~ 27097259 (-) |
