G240348


Basic Information

Item Value
gene id G240348
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26415402 ~ 26443224 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU274677
AAAGAATTCTCAATTTTctcttgtatttttattttattttgtattttaattttactaggcaagtcagttaagaacaaattcttatttacaatgacagcctaggaacagtgggttaatgaAGCAAATGAAGAAGAGAACTGTTGATGACCACTCTAGTTGTGAACAACTGTGTGCTCTGAGCTTCTGCTCTGTCAGCAGCATCATGGGAATTTCCCCTGCACTGTCAGTGTGACTACATGGGTGGCTCCTCCCCCATAAAGTACCCCTGGATTATTATCTTAGTATATCAATGGTATTTAGATGgaggtcagtggaggctgctgaggggaggactgctcataataatggctggaatggagtcaatggaatggtatcaaccacatggaaacgaagtgtttgataccattccattgactccattccagacattattatgagccaacctccactcagcagcctccattgaTGGAGGTAGGCAAAGAGGGGGACAATGCAGTTCAGTGAACCATGACTGAACCATGACAGTTACATCATCCCTCACAAAAAGAGAAATGAGTGAAAGTGAAAAATGTGCCTTTTAGAAAGCTTGACAACTTGATAAGAAGTCTAAGCATGGGTCACTAGTGCTATTCTAACCATTCTGAGACTTTGGAACATACTTTGTATAGCTGTTCTTTTTTCTGTTTATTTGTTTTGCTATTACACATGGGAAATGAGAGGAGGGTTCTTCATTTGAATTAGTTCCACGTTTCTGAGTTAGATCAAAGTTAGAGTGGGCAATACGCTAATATTAAACTATCAAAAGGAAACCTATTTTGATGCATAGCATGATCTTGATTGAAGATTCCAACAAATATCAGGTAGCCTgtgtgccttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU274677 True 877 lncRNA 0.39 2 26415402 26443224

Neighbor

gene id symbol gene type direction distance location
LOC110516029 ankmy2 coding downstream 13505 26396816 ~ 26401897 (-)
LOC110516015 LOC106582291 coding downstream 23220 26389811 ~ 26392182 (-)
LOC110515999 LOC106582287 coding downstream 27951 26351160 ~ 26387451 (-)
LOC110515986 meox2 coding downstream 84234 26317574 ~ 26331168 (-)
LOC110515972 LOC106582276 coding downstream 99294 26275762 ~ 26316108 (-)
trnaa-ugc-3 NA coding upstream 18625 26461849 ~ 26461922 (-)
LOC110503983 LOC106582320 coding upstream 31874 26475098 ~ 26524060 (-)
LOC110516068 LOC106582335 coding upstream 81155 26524379 ~ 26533272 (-)
mgat1a LOC106582341 coding upstream 90420 26533644 ~ 26536641 (-)
LOC110516135 LOC106582343 coding upstream 98490 26541714 ~ 26547841 (-)
G239939 NA non-coding downstream 44411 26370752 ~ 26370991 (-)
G239904 NA non-coding downstream 94862 26320315 ~ 26320540 (-)
G239864 NA non-coding downstream 206298 26208684 ~ 26209104 (-)
G239853 NA non-coding downstream 228199 26187003 ~ 26187203 (-)
G240371 NA non-coding upstream 23211 26466435 ~ 26466854 (-)
G240384 NA non-coding upstream 30545 26473769 ~ 26474043 (-)
G240402 NA non-coding upstream 95702 26538926 ~ 26539245 (-)
G240403 NA non-coding upstream 96320 26539544 ~ 26541140 (-)
LOC110515750 LOC106582146 other downstream 590645 25822812 ~ 25825108 (-)
LOC110515384 LOC106582009 other downstream 1179035 25171287 ~ 25236536 (-)
LOC110515208 LOC106581894 other downstream 1449194 24936516 ~ 25052970 (-)
LOC110515154 LOC106605289 other downstream 1645079 24767049 ~ 24799511 (-)
G237832 NA other downstream 1893858 24521219 ~ 24521544 (-)
G240409 NA other upstream 125877 26569101 ~ 26569522 (-)
G240464 NA other upstream 231368 26674592 ~ 26675033 (-)
LOC110516631 LOC106582601 other upstream 627831 27070914 ~ 27097259 (-)
LOC110516667 LOC106582624 other upstream 668958 27111084 ~ 27127488 (-)
LOC110516678 LOC106605187 other upstream 712344 27154680 ~ 27159987 (-)

Expression


Co-expression Network