G240431 (LOC106582366)


Basic Information

Item Value
gene id G240431
gene name LOC106582366
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26605207 ~ 26605715 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU274763
GAGCGCTTGCTCCCACAGAGGCCGAGGTCGTATTCGAAGATGAGGGAAACTTTTGTAGATTTATTGGCATGGCATGTTCCGAGTGTCAGTTGAGACAGTGAACTCCCGGTGcccaaaatgtttttctttaCCTGCACGAACATCTTGTTGATGTTACAAAGTGTTATCACTTCGCGGGCTTGACTTTTTGGACCAGAGGGCTTCTGTGTTGGGTACACCGGGACCAGTATTTTCCTAACTTTATCCGGTAATTGTTCGTGTCCAGTTCCACGGACTGGAGAGAAATGTTCCTTGTCTACCAGCGGCACCCTTGAGTGCTGGAACACAGGTAGTTCGAGGTAAGATGGTGAGTCTTCGGCGAATACCTTCACAGAAGACTGGCGTGCATTTGAGCCTCCCTCTGCTCTTAGAGAATGCAAAAGAAACAACAACGCCAAGttgaaaatataaaacatatcTATATTCCTGTACCAAAATGGTACAATATCTCGAGCAAAATCAGGCCCTGC

Function

NR:

description
zona pellucida sperm-binding protein 3-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU274763 True 509 lncRNA 0.46 1 26605207 26605715

Neighbor

gene id symbol gene type direction distance location
dhx16 LOC106582345 coding downstream 37577 26548090 ~ 26567630 (-)
LOC110516135 LOC106582343 coding downstream 57366 26541714 ~ 26547841 (-)
mgat1a LOC106582341 coding downstream 68566 26533644 ~ 26536641 (-)
LOC110516068 LOC106582335 coding downstream 71935 26524379 ~ 26533272 (-)
LOC110503983 LOC106582320 coding downstream 81147 26475098 ~ 26524060 (-)
LOC110516190 fli1 coding upstream 2437 26608152 ~ 26621798 (-)
LOC110505173 NA coding upstream 31012 26636727 ~ 26637149 (-)
LOC110516273 NA coding upstream 41310 26647025 ~ 26649990 (-)
LOC110516285 LOC106582421 coding upstream 86023 26691738 ~ 26715464 (-)
LOC110505184 LOC106582443 coding upstream 123359 26729074 ~ 26736469 (-)
G240412 NA non-coding downstream 31424 26573004 ~ 26573783 (-)
G240383 NA non-coding downstream 37236 26567694 ~ 26567971 (-)
G240403 NA non-coding downstream 64067 26539544 ~ 26541140 (-)
G240402 NA non-coding downstream 65962 26538926 ~ 26539245 (-)
G240432 NA non-coding upstream 64 26605779 ~ 26606214 (-)
G240445 LOC106582385 non-coding upstream 22559 26628274 ~ 26630084 (-)
G240450 NA non-coding upstream 32447 26638162 ~ 26638375 (-)
G240438 NA non-coding upstream 53356 26659071 ~ 26659348 (-)
G240456 LOC106582397 non-coding upstream 57280 26662995 ~ 26664067 (-)
G240409 NA other downstream 35685 26569101 ~ 26569522 (-)
LOC110515750 LOC106582146 other downstream 780450 25822812 ~ 25825108 (-)
LOC110515384 LOC106582009 other downstream 1368840 25171287 ~ 25236536 (-)
LOC110515208 LOC106581894 other downstream 1638999 24936516 ~ 25052970 (-)
LOC110515154 LOC106605289 other downstream 1834884 24767049 ~ 24799511 (-)
G240464 NA other upstream 68877 26674592 ~ 26675033 (-)
LOC110516631 LOC106582601 other upstream 465340 27070914 ~ 27097259 (-)
LOC110516667 LOC106582624 other upstream 506467 27111084 ~ 27127488 (-)
LOC110516678 LOC106605187 other upstream 549853 27154680 ~ 27159987 (-)
G240906 NA other upstream 578945 27184660 ~ 27185105 (-)

Expression


Co-expression Network