G240445 (LOC106582385)


Basic Information

Item Value
gene id G240445
gene name LOC106582385
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26628274 ~ 26630084 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU274780
aaatgtattaatttattGCAAACTTTGGAGACAATTCATTTTTCCAATTTAAGAATGTACTGTAAAACAGAGGGCATTATTATCATCACATTTTTGTCGCTtgccttaaaaaaaaaatgtgaatggCCCCTATCTCCATTATTCCCCCTTCAGGTCACTGATTAGGAATGGCTCCATCTCCATCAGGATATCTAAGAATATATCTTTGCCTTTGGGCCCACATGCTTTCAGAGGGCCATCGTAGAGCTCCCTCATCCTGTTCTGGGTGGTTCTGTTAGCCTTCACGTCACTGTAGGCGTTTTGGGTGATGATTCCCCTCTCCAGGAGTCTATCCAGTAGGGGTTCCACCTGGCTCACTCTGTCGATCAGGGCCGTCCGGTGATGGTCCACAAAGTGTTTATCTGGTTCATCTTCGTTGGTCCAGTTGCACTTTCCATTCTATCACCAGATGTTACGCAAGATCCCGGAGCTTCTTGAATTCCATCAGTTCCTTTGCGACATCTTGGCAGTTAATTGCAGCCAAGACCTCTATAGCCACATTCACAGCCCCGTCTTCAGTGAAGGTACGGGTCAGAATGTCTACCAAGTCCACTGGGTCAGCTTTCTCAACAATGCCCCTGCGAACTTTTGGCTCCTGCTTGCGGTCACAGAGCTTACGTCTGAACTTCTTCAATTCAGCCTCTCCCAAGTCATCCAGGACTCCAATTAATATATCGCCAACGGTTTTCGACATTTTTTATGCCAAACTGTAATTTAAACAAGGTTTTCTAACATTAGGCTACGTGCCTTCTATTCTGTTGTCTAATAGGCTACTGACTGTATTATCTTCAAGATACTGTACAATTCG
>TU274783
aaatgtattaatttattGCAAACTTTGGAGACAATTCATTTTTCCAATTTAAGAATGTACTGTAAAACAGAGGGCATTATTATCATCACATTTTTGTCGCTtgccttaaaaaaaaaatgtgaatggCCCCTATCTCCATTATTCCCCCTTCAGGTCACTGATTAGGAATGGCTCCATCTCCATCAGGATATCTAAGAATATATCTTTGCCTTTGGGCCCACATGCTTTCAGAGGGCCATCGTAGAGCTCCCTCATCCTGTTCTGGGTGGTTCTGTTAGCCTTCACGTCACTGTAGGCGTTTTGGGTGATGATTCCCCTCTCCAGGAGTCTATCCAGTAGGGGTTCCACCTGGCTCACTCTGTCGATCAGGGCCGTCCGGTGATGGTCCACAAAGTTTACCTTGGTTCATCTTCGTTGGTCCAGTTGCACTTTCCATTCTATCACCAGATGTTACGCAAGATCCCGGAGCTGTAAAATAGACTTCATGAGACGCCACCAATCGAATAAAAATATTGAATAGTAGGGCCTAAAGATAAATCAGCAAGCAATCTAAATGTGTTTATTGCAGAATGTATTAGGCCTACTTTTAGTTGAAAATTAATATATACTACTGTACGCTATCATTCTGGTCAGAAGAGCAAAATAGAATGCTCGCATAAGTGAAAGTAAAACTGTCAACTTCCTTATAGTTTTCCTTCCCTACGTTATGGACATTTCAATGTAATTTATTTAGGCCCTAGATCAAATCAAGTTTTGTTCTAGCCTACTTTTGGGTTAACTGAAGTGTTTTTAAACCTTTCAAAGATATGAAATTAAATATTTGTAAATGTCCAATGGACGTGCCTCCTACTTTATTCGACTTACATTTCTTGAATTCCATCAGTTCCTTTGCGACATCTTGGCAGTTAATTGCAGCCAAGACCTCTATAGCCACATTCACAGCCCCGTCTTCAGTGAAGGTACGGGTCAGAATGTCTACCAAGTCCACTGGGTCAGCTTTCTCAACAATGCCCCTGCGAACTTTTGGCTCCTGCTTGCGGTCACAGAGCTTACGTCTGAACTTCTTCAATTCAGCCTCTCCCAAGTCATCCAGGACTCCAATTAATATATCGCCAACGGTTTTCGACATTTTTTATGCCAAACTGTAATTTAAACAAGGTTTTCTAACATTAGGCTACGTGCCTTCTATTCTGTTGTCTA

Function

NR:

description
apoptosis-associated speck-like protein containing a CARD isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU274780 False 847 lncRNA 0.44 3 26628274 26630084
TU274783 True 1200 lncRNA 0.41 2 26628317 26630084

Neighbor

gene id symbol gene type direction distance location
LOC110516190 fli1 coding downstream 6476 26608152 ~ 26621798 (-)
dhx16 LOC106582345 coding downstream 60644 26548090 ~ 26567630 (-)
LOC110516135 LOC106582343 coding downstream 80433 26541714 ~ 26547841 (-)
mgat1a LOC106582341 coding downstream 91633 26533644 ~ 26536641 (-)
LOC110516068 LOC106582335 coding downstream 95002 26524379 ~ 26533272 (-)
LOC110505173 NA coding upstream 6643 26636727 ~ 26637149 (-)
LOC110516273 NA coding upstream 16941 26647025 ~ 26649990 (-)
LOC110516285 LOC106582421 coding upstream 61654 26691738 ~ 26715464 (-)
LOC110505184 LOC106582443 coding upstream 98990 26729074 ~ 26736469 (-)
LOC110516341 LOC106582531 coding upstream 182382 26812466 ~ 26817929 (-)
G240432 NA non-coding downstream 22060 26605779 ~ 26606214 (-)
G240431 LOC106582366 non-coding downstream 22559 26605207 ~ 26605715 (-)
G240412 NA non-coding downstream 54491 26573004 ~ 26573783 (-)
G240383 NA non-coding downstream 60303 26567694 ~ 26567971 (-)
G240403 NA non-coding downstream 87134 26539544 ~ 26541140 (-)
G240450 NA non-coding upstream 8078 26638162 ~ 26638375 (-)
G240438 NA non-coding upstream 28987 26659071 ~ 26659348 (-)
G240456 LOC106582397 non-coding upstream 32911 26662995 ~ 26664067 (-)
G240458 NA non-coding upstream 36975 26667059 ~ 26667329 (-)
G240463 NA non-coding upstream 40544 26670628 ~ 26670901 (-)
G240409 NA other downstream 58752 26569101 ~ 26569522 (-)
LOC110515750 LOC106582146 other downstream 803517 25822812 ~ 25825108 (-)
LOC110515384 LOC106582009 other downstream 1391907 25171287 ~ 25236536 (-)
LOC110515208 LOC106581894 other downstream 1662066 24936516 ~ 25052970 (-)
LOC110515154 LOC106605289 other downstream 1857951 24767049 ~ 24799511 (-)
G240464 NA other upstream 44508 26674592 ~ 26675033 (-)
LOC110516631 LOC106582601 other upstream 440971 27070914 ~ 27097259 (-)
LOC110516667 LOC106582624 other upstream 482098 27111084 ~ 27127488 (-)
LOC110516678 LOC106605187 other upstream 525484 27154680 ~ 27159987 (-)
G240906 NA other upstream 554576 27184660 ~ 27185105 (-)

Expression


Co-expression Network