G240456 (LOC106582397)


Basic Information

Item Value
gene id G240456
gene name LOC106582397
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26662995 ~ 26664067 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU274796
cctgaccaaaatggtTTAAGTTTATCCTAGTATTCTAATTATATGGGGTGTGATCCTTCAAAATGTCACTGGTGTGACCAAACCGGACAGTATCGTGCTCGTGTCAATCTGTCAGTGAGTTTACAAACTAAATCACACATCATGCAATGTAGAGATGCAAACGACTGTCAAATATTgcatatattttgttttgatcCGTTTTTAGAAAATGACTTTCATCCAAGCACAGCCTACTTACTGTGCGCTAGCACCATTCATAGCGCCTGTCAGACAACAGAATGTAAACGACATGGTTAGAATGTAACTCCGTGAAATCGCACTGTCTAGGGAAGTATGAGTTATACAATCACAATAACAGATGCTGTCAGAAATTAGCCAAATTAGGTCGCGGATTTCAGACTGCTATAGACGCACAAGTACAGCAGACCCGGGTGCCCGAAATGGCCATTCGAATCAAACGACGTTAATTTCCTTTCTACCAGCCCATCATTCAATAGGCAATCACTGACCCTCCCAGTTTCCAAACCACATGGAGACGAGTGTAGCCTATACCGTTATGAAATGCATTTCATAAAGGACAAACAGGCGAAATATTTCCATTTGGAGGGCAGACAACTCCATTACGTAAATAATCATTTTGCCACTTACTCCAACATGTCATGAGGTGTTTTAAATTTGGACGTGATGTCCACACGCTGCTTCATAGTATCTGTATCACTAGGGCACCGGTCCTGTGTGCACTGCGCCGAGCCAGCCGACGCTACACTGTCCATCCCGATGTCTGTTTTGTCGGATATAAAAACGCACAGGGGTCCCCGAATAGAAACGAGCACTTCATGTGCGACCTGTTTCACTTCCCCATCACCGACATCCTTCCCTCGCATCCAGGCAGGTAGCGCGACCTCAACCAGTCTCCTATTCCGTGTCTGGGCAAACTAGCGTTGACAAGCTGCGCCCATAAGTAATCCGTACTGAACACACagaggcagcagagagagggggaggtggaggcacAAGAGAGGCCATGCACGGATGTACAGTAGcagtgcactcttagaaaaaaaataataact

Function

NR:

description
PREDICTED: GRAM domain-containing protein 1A-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU274796 True 1073 lncRNA 0.45 1 26662995 26664067

Neighbor

gene id symbol gene type direction distance location
LOC110516273 NA coding downstream 13005 26647025 ~ 26649990 (-)
LOC110505173 NA coding downstream 25846 26636727 ~ 26637149 (-)
LOC110516190 fli1 coding downstream 41197 26608152 ~ 26621798 (-)
dhx16 LOC106582345 coding downstream 95365 26548090 ~ 26567630 (-)
LOC110516135 LOC106582343 coding downstream 115154 26541714 ~ 26547841 (-)
LOC110516285 LOC106582421 coding upstream 27671 26691738 ~ 26715464 (-)
LOC110505184 LOC106582443 coding upstream 65007 26729074 ~ 26736469 (-)
LOC110516341 LOC106582531 coding upstream 148399 26812466 ~ 26817929 (-)
LOC110516351 LOC106605237 coding upstream 167109 26831176 ~ 26881042 (-)
LOC110516494 NA coding upstream 269311 26933378 ~ 26939575 (-)
G240438 NA non-coding downstream 3647 26659071 ~ 26659348 (-)
G240450 NA non-coding downstream 24620 26638162 ~ 26638375 (-)
G240445 LOC106582385 non-coding downstream 32911 26628274 ~ 26630084 (-)
G240432 NA non-coding downstream 56781 26605779 ~ 26606214 (-)
G240431 LOC106582366 non-coding downstream 57280 26605207 ~ 26605715 (-)
G240458 NA non-coding upstream 2992 26667059 ~ 26667329 (-)
G240463 NA non-coding upstream 6561 26670628 ~ 26670901 (-)
G240472 NA non-coding upstream 35214 26699281 ~ 26699605 (-)
G240497 NA non-coding upstream 98646 26762713 ~ 26763620 (-)
G240519 NA non-coding upstream 121358 26785425 ~ 26828419 (-)
G240409 NA other downstream 93473 26569101 ~ 26569522 (-)
LOC110515750 LOC106582146 other downstream 838238 25822812 ~ 25825108 (-)
LOC110515384 LOC106582009 other downstream 1426628 25171287 ~ 25236536 (-)
LOC110515208 LOC106581894 other downstream 1696787 24936516 ~ 25052970 (-)
LOC110515154 LOC106605289 other downstream 1892672 24767049 ~ 24799511 (-)
G240464 NA other upstream 10525 26674592 ~ 26675033 (-)
LOC110516631 LOC106582601 other upstream 406988 27070914 ~ 27097259 (-)
LOC110516667 LOC106582624 other upstream 448115 27111084 ~ 27127488 (-)
LOC110516678 LOC106605187 other upstream 491501 27154680 ~ 27159987 (-)
G240906 NA other upstream 520593 27184660 ~ 27185105 (-)

Expression


Co-expression Network