G240601


Basic Information

Item Value
gene id G240601
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26889876 ~ 26891172 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU274966
GCAGGTTGTAGTGAGTGAATAACATTGATTTAAAGATAGTTGGGCCCTCTTTGTGGAACATTTCAATATAAagcacggctttcagccaatcagcataaAGGGATCGAACCACACGGTTTGTAATTATCTATATAACTCTTAGTTTGCATATTTGCTTTCATATCATTAGATCTATCCAAAAACAGGGTGACACAGGAAAATCTGGTGTGCTGGCAGAGTTGATGTACCAAGCAGGTGGCAGCTGGGCTCTTACCTGGTACAGTACCAATCCTCATGACTTGCCATAGCAAAATTTGTCAACAATTAAATTCCTGAACACATTTCAATAACAGGTATAAACAAAGGCCACCATTCAGTCAGACCCAGTGTTACAGCACATCCATCACGTCTACATATTGGCAGACATTGAACATGGAGATTGAACAAGCAACGTGAAAGGCCTTTAGAGTAAAATCTATGGAAATAGGAAAGAAAGCATGGTTATGATGTTCATGTGGTGAAAATAGTAGATACCCataaagacaaaaacaaatactGAAATACTAGTGTGCCTTCTGTATGTTATACAGCATTCCCTAAATGATACTCCCTCAGCGAACAGCTCTTCTTCATGCCACAGAAACAAGACAGTGACATCCAGTGGTACCTCCTAGAACAGCATGTCAGAGCCTATTATAGAATTTTCACCCGGTTTCCAATTGAAGTCAACGCATGACTTAGTGACTATTTGACTTAAGTAGAAGTTTGCCCCATAGACTGTATTTTTATATAGAAAAAAACCCTGAGCATTTTGAAAAAGCTTTATTGTAAAATTACGCTTGTTGTAAATCACAGTCAACACAGTACGGACAGTGGGTATGACAAGTAGACTGTACAACAATGgagtaagtacatttttcatagcaataataaaattaaaattaaaattaaatgaaCAAATATAATCTGCCTATGGCTGACATTATTCATGACAAATATCATTGTTGGACAGACAGTTAAAACTAATCCAAAACTCTAAATACGATgataaacaatgtaaaaataacatggctattatTTGATTTTAGTCAttagaggctcttatccagagcaattagggttaagtgccttgctcaagggcacatcggcagattttttaCTTAGTTGGCTCGgcgatttgaaccagcgacctttcggttagtggcccaacgctcttaaccgctaggctacctcccGCCCTAATAAAATCTATTCCATTTTAAATGTACAGCATGATCtcattttcatttaaaaaatccaTGACTTCTCACAGTAAATA
>TU274967
CTTGTTGTAAATCACAGTCAACACAGTACGGACAGTGGGTATGACAAGTAGACTGTACAACAATGgagtaagtacatttttcatagcaataataaaattaaaattaaaattaaatgaaCAAATATAATCTGCCTATGGCTGACATTATTCATGACAAATATCATTGTTGGACAGACAGTTAAAACTAATCCAAAACTCTAAATACGATgataaacaatgtaaaaataacatggctattatTTGATTTTAGTCAttagaggctcttatccagagcaattagggttaagtgccttgctcaagggcacatcggcagattttttaCTTAGTTGGCTCGgcgatttgaaccagcgacctttcggttagtggcccaacgctcttaaccgctaggctacctcccGCCCTAATAAAATCTATTCCATTTTAAATGTACAGCATGATCtcattttcatttaaaaaatccaTGACTTCTCACAGTAAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU274966 False 1297 lncRNA 0.37 1 26889876 26891172
TU274967 True 480 lncRNA 0.35 1 26889876 26890355

Neighbor

gene id symbol gene type direction distance location
LOC110516351 LOC106605237 coding downstream 8834 26831176 ~ 26881042 (-)
LOC110516341 LOC106582531 coding downstream 71947 26812466 ~ 26817929 (-)
LOC110505184 LOC106582443 coding downstream 153407 26729074 ~ 26736469 (-)
LOC110516285 LOC106582421 coding downstream 174412 26691738 ~ 26715464 (-)
LOC110516273 NA coding downstream 239886 26647025 ~ 26649990 (-)
LOC110516494 NA coding upstream 42206 26933378 ~ 26939575 (-)
LOC110516475 NA coding upstream 79226 26928593 ~ 26978577 (-)
LOC110516606 LOC106605168 coding upstream 158820 27049992 ~ 27064472 (-)
LOC110516631 LOC106582601 coding upstream 179742 27070914 ~ 27097259 (-)
LOC110516644 LOC106582613 coding upstream 207368 27098540 ~ 27103054 (-)
G240590 NA non-coding downstream 11860 26877236 ~ 26878016 (-)
G240588 NA non-coding downstream 15228 26874125 ~ 26874648 (-)
G240579 NA non-coding downstream 27909 26861762 ~ 26861967 (-)
G240574 NA non-coding downstream 32599 26857069 ~ 26857277 (-)
G240519 NA non-coding downstream 61457 26785425 ~ 26828419 (-)
G240546 LOC105031101 non-coding upstream 13945 26905117 ~ 26906092 (-)
G240545 NA non-coding upstream 20312 26911484 ~ 26965713 (-)
G240615 NA non-coding upstream 29590 26920762 ~ 26958098 (-)
G240617 NA non-coding upstream 43626 26934798 ~ 26972354 (-)
G240464 NA other downstream 214843 26674592 ~ 26675033 (-)
G240409 NA other downstream 320354 26569101 ~ 26569522 (-)
LOC110515750 LOC106582146 other downstream 1065119 25822812 ~ 25825108 (-)
LOC110515384 LOC106582009 other downstream 1653509 25171287 ~ 25236536 (-)
LOC110515208 LOC106581894 other downstream 1923668 24936516 ~ 25052970 (-)
LOC110516667 LOC106582624 other upstream 221010 27111084 ~ 27127488 (-)
LOC110516678 LOC106605187 other upstream 264396 27154680 ~ 27159987 (-)
G240906 NA other upstream 293488 27184660 ~ 27185105 (-)
G242021 LOC106582922 other upstream 1363985 28205275 ~ 28256509 (-)

Expression


Co-expression Network