G240545


Basic Information

Item Value
gene id G240545
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26911484 ~ 26965713 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU274900
TTGAGTGATGTCGCTTCTGCAAACAATGAGGGGTGGTGTGGGAGGAATAACTGTTACATACTGTATTAATTTAGTCATACTAATACATGGAGATATAGAATGTATTTGGGGTGTATTTTCCTTACTGTTTTGGGTATGAGAGAACAGATAACACACTATATAGATAAACTGAGCGGGTCACATTCTCTGTTGtttactttatttatttgttgtttGGAACCAAAGAAAGATGGCTTTGCTTGAGGCGGGACAGACTTGTAAAATAAAGAGAGTGATCAAACATCATCATAGAGCTCATATTGTCATTAAGTGAAAACTGTGGTAATTTGCAGAAGGATTGCAGAATTCTGATCGGAATTATtgtgtcaaaaatataaaaaaaaaaaatcatcacaaTAACAATAATGAATACCACAAAGTAAAGAAAGTACAAATCTGCTTTCCAACACACTATGTGACAAACAAATTAGATAAGACATGAACAGCGCTTCTCCATTTTGTTTCCAGGTTTAGAAAGAAATTAACCCCCCCATGTGGCGTTCAAGAGAACTGACGACAGTAAGTGTTACTAAACTGATGTCCATATTGGCATGTCTCAACGTTGGGTAACACATCTTGAGCACTCTGACATTACTTCTAGTGACTAAACCATGTCAGAACAATTACATAAAATATGTTATTAACAGTCATGACAGCTGACATAAGCTTGACAGCTGACTTGACACCTTCATGGCACAAATCTTTGCTTCAGTCAGCTTATTGGCTTAGGATACCGCTAGCCAACTAATTTACATAAATATCCATTTGTGTCATGACAGTGTAAAGGGTTGTCAGTATTTTGACATCAGTTTTCACGACCGAAAATGAcatgtgttatgttatgacagCGTTATGTCACCCTTATGACAGCGTTATGTCACCCTTATGACAGAGAAGTCAGTTAAAGTGTTACCAAACCTGTATCCGACTTGCCTGTGTAAATCATTGTTGTAATACTgagcatgtactgtacataccgTAGTATTTTTACACATATGGCTGACAGCATAATAGTCATGCAGGGTATTTATTTACATAATGTATACTGGTATCTTTTTACCCATCCATATGCAGCTTATTAATATTGTATTAACAGTCATTGTTATCAAGTGATGCCATTAGTGAGCTTGGGGATTACATTACATGAGTTGATCACGTATATTTGAACAGCACAACCAACTGGTATATCAGCTTTAATGTTGTGCCACTCAAACGCCTCATCTGATACAACCGTATAGGATTAGGCTTCGATTTCACAATTCACAACCATTGAAGAAGACATTTTGGGAGAAGCGGTCTCCGGTAAAGTGATACTTTGAAACACTGTGATCAGTGTTCGCTGATCTTTCAGCActgtttgcacacacacacacacacattgtctcaACGAGATACATTTTGGCCTGCTGTGCAAGTGCTACCGTGGAGTCATGTATGCCAGATTGATCCAAAAAATGTATTCTAACCCATTGGTTCCCATTTAAGGATAAGTTAACACTTATCCTTAGCAAAACAGAGAAATCGTCCAAAAATGCTATAATTAAATCATGGGCAACAGCATAAACAGAACATTCTGTGTTAGCCCGGCACAGTTCCCGAAGAGCAAACCACAATTCAACCAGTGCTTATAATGCATAAGAACTAAAAAATCAGCCCACTTTCTTGGACGAACAGAACCTTGTGTTCAAGGCTGGACAAACCTCTAAGAGTATCCATCTTCTCTCTTTatataaaatcaaataaatattCATTTCTCATCATCATCAAAAAGCCACTGAGTCACAGCACACATCACTATTGAACTATATGTGGGAGCAGAATATGTGAGATGAAGATGACTGGCTTCAGTTGGATATGTATCAGGCCTGACGTTTGTTGAACACTGGTCAGTGTTGACAACCACTGGatcaggaagagagaagagatccTTCATTTCCTCCAGGTCCAgggtcagaaatagagataagaaAGTAAAAAGCACAAAATACACCCCTTTCCCAGACACTTCGACTGGCAGCGGACACAGTGGAGAAGGACTATAATGGACAGATCTAGATAGTTAGCCTGGTATCCAAGCTGATTGCGTTGCCTTTCACAGGAAAACTGGTGAGCGCAGCGTTCaatctggtttaaccaggctagctATAAGTATGATATAGGGTGACATACAGAAGGGGAGCCCCAGAAAATGTGTTACTGTGTCCCAAGCTTGATAGCAATGCCAACAATTAATGGTATAGAGATGGGAATAGCAACATTGAATCTagatgatacagtacagtaactaaAACATTGTACCTGTTATGAGGAAATGTTGTGACTATGACCAGTAGGGTAAGAGCTGGGAGACCGAGAGCTGCTGATAATACAAAGATCTTTTTACATTGTCCACTGGGCCGTGTTCCGACCTTGCAAGTAGCTACCAGCAGTCCTGGGTGGCGAGATGTCACTGGGGCTCCCCCTGGAGGCTTGGGGGTCAACTAACGGGGGCATCATTTGAAATGAGTCAGGGACGGGGGGAGACGATGGGGGATCTCGGTGTGATGGTGAAGGGTGGTGATGGTGTCCACGGGGGAGGGGGGAAGACGTTTGAAGAGGGGGTGAATGACGTGAGGAAGGGGGCGACAACATGGCTGCCACTGTGTCCCGCGGTGACGATGGGTCAGGGAAGGATCGCGATTCATTTGGCCTTGATCTCGGTGTAGTCGCTGCCGTCATCCCTGGAGCGCCCCCCCAGAAACTCCAGGGCGGCATAGTT
>TU274901
GAAATTTGCAACTAGAGACCGTAGCCTACCAGTTAGAGAGACGAGCCAGCAACCGGAGGGTTACCAGTTCCAATTCCGCGTCCGATGGGAAAACAGGAGGGTTTCTGGTATAAAATTCTAGATGCCATTGcctgccattgtgcccttgaACAACCCTCCACAACAACAGCTCCCCGGGCACCAAGTCACAGGTTACTGTTTTTTGGCATGAATCTcattctggaggcagctctgcagagtggtcaatAGCTGACACAGCCCCAAAGTCATAACATCTGATGTTAAACCTAATTAACCCTTGCCTTAACCACACAGCtaaacctaatgcctaaccttaaatgacattttccATTGCTTTACGTTTTTTGGTGTGTGTGGAAGCGCAGAAACCATTTTTATGTGAATGAATTAAAACCTTTTTCTGAGTTAATGTCTCTGGTtttatgcaacaacaaaaaaaagcaaCATTTTAACCAAATTATGTTGTATTTTAAGTAAAAGCACATAAGGAAGCTACAAGTTTTTGTTATCTTCCTCATGTTCAACTATGTTAATAAAGATGTTATGTCGATAATCAAGGTAACACATTTGCACATATTATCAAGTGAAATGGTTGAAAGAAAAGCTTTGTGTGATGTCGCTTCTGCAAACAATGAGGGCTGGTGTGGGAGGAATAACTGGTACATACTGTATTAATAAAGTCATACTAATACATGGAGATATAGAATGTATTTGGGGTGTATTTTCCTTACTGTTTTGGGTATGAGAGAACAGATAACACACTATATAGATAAACTGAGTGGGTCACATTCTCTGTTGtttactttatttatttgttgtttGGACCCAAAGAAAGATGGCTTTGCTTGAGGCGGGACAGACTTGTAAAATAAAGAGAGTGATCAAACATCATCATAGAGCTCATATTGTCATTAAGTGAAAACTGTGGTAATTTGCAGAAGGATTGCAGAATTCTGATCGGAATTATtgtgtcaaaaatataaaaaaaaaaaatcatcacaaTAACAATAATGAATACCACAAAGTAAAGAAAGTACAAATCTGCTTTCCAACACACTATGTGACAAACAAATTAGATAAGACATGAACAGCGCTTCTCCATTTTGTTTCCAGGTTTAGAAAGAAATTAACCCCCCCATGTGGCGTTCAAGAGAACTGACGACAGTAAGTGTTACTAAACTGATGTCCATATTGGCATGTCTCAACGTTGGGTAACACATCTTGAGCACTCTGACATTACTTCTAGTGACTAAACCATGTCAGAACAATTACATAAAATATGTTATTAACAGTCATGACAGCTGACATAAGCTTGACAGCTGACTTGACACCTTCATGGCACAAATCTTTGCTTCAGTCAGCTTATTGGCTTAGGATACCGCTAGCCAACTAATTTACATAAATATCCATTTGTGTCATGACAGTGTAAAGGGTTGTCAGTATTTTGACATCAGTTTTCACGACCGAAAATGAcatgtgttatgttatgacagCGTTATGTCACCCTTATGACAGCGTTATGTCACCCTTATGACAGAGAAGTCAGTTAAAGTGTTACCAAACCTGTATCCGACTTGCCTGTGTAAATCATTGTTGTAATACTgagcatgtactgtacataccgTAGTATTTTTACACATATGGCTGACAGCATAATAGTCATGCAGGGTATTTATTTACATAATGTATACTGGTATCTTTTTACCCATCCATATGCAGCTTATTAATATTGTATTAACAGTCATTGTTATCAAGTGATGCCATTAGTGAGCTTGGGGATTACATTACATGAGTTGATCACGTATATTTGAACAGCACAACCAACTGGTATATCAGCTTTAATGTTGTGCCACTCAAACGCCTCATCTGATACAACCGTATAGGATTAGGCTTCGATTTCACAATTCACAACCATTGAAGAAGACATTTTGGGAGAAGCGGTCTCCGGTAAAGTGATACTTTGAAACACTGTGATCAGTGTTCGCTGATCTTTCAGCActgtttgcacacacacacacacacattgtctcaACGAGATACATTTTGGCCTGCTGTGCAAGTGCTACCGTGGAGTCATGTATGCCAGATTGATCCAAAAAATGTATTCTAACCCATTGGTTCCCATTTAAGGATAAGTTAACACTTATCCTTAGCAAAACAGAGAAATCGTCCAAAAATGCTATAATTAAATCATGGGCAACAGCATAAACAGAACATTCTGTGTTAGCCCGGCACAGTTCCCGAAGAGCAAACCACAATTCAACCAGTGCTTATAATGCATAAGAACTAAAAAATCAGCCCACTTTCTTGGACGAACAGAACCTTGTGTTCAAGGCTGGACAAACCTCTAAGAGTATCCATCTTCTCTCTTTatataaaatcaaataaatattCATTTCTCATCATCATCAAAAAGCCACTGAGTCACAGCACACATCACTATTGAACTATATGTGGGAGCAGAATATGTGAGATGAAGATGACTGGCTTCAGTTGGATATGTATCAGGCCTGACGTTTGTTGAACACTGGTCAGTGTTGACAACCACTGGatcaggaagagagaagagatccTTCATTTCCTCCAGGTCCAgggtcagaaatagagataagaaAGTAAAAAGCACAAAATACACCCCTTTCCCAGACACTTCGACTGGCAGCGGACACAGTGGAGAAGGACTATAATGGACAGATCTAGATAGTTAGCCTGGTATCCAAGCTGATTGCGTTGCCTTTCACAGGAAAACTGGTGAGCGCAGCGTTCaatctggtttaaccaggctagctATAAGTATGATATAGGGTGACATACAGAAGGGGAGCCCCAGAAAATGTGTTACTGTGTCCCAAGCTTGATAGCAATGCCAACAATTAATGGTATAGAGATGGGAATAGCAACATTGAATCTagatgatacagtacagtaactaaAACATTGTACCTGTTATGAGGAAATGTTGTGACTATGACCAGTAGGGTAAGAGCTGGGAGACCGAGAGCTGCTGATAATACAAAGATCTTTTTACATTGTCCACTGGGCCGTGTTCCGACCTTGCAAGTAGCTACCAGCAGTCCTGGGTGGCGAGATGTCACTGGGGCTCCCCCTGGAGGCTTGGGGGTCAACTAACGGGGGCATCATTTGAAATGAGTCAGGGACGGGGGGAGACGATGGGGGATCTCGGTGTGATGGTGAAGGGTGGTGATGGTGTCCACGGGGGAGGGGGGAAGACGTTTGAAGAGGGGGTGAATGACGTGAGGAAGGGGGCGACAACATGGCTGCCACTGTGTCCCGCGGTGACGATGGGTCAGGGAAGGATCGCGATTCATTTGGCCTTGATCTCGGTGTAGTCGCTGCCGTCATCCCTGGAGCGCCCCCCCAGAAACTCCAGGGCGGCATAGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU274900 False 2797 lncRNA 0.42 3 26911484 26965713
TU274901 True 3424 lncRNA 0.41 2 26911484 26914931

Neighbor

gene id symbol gene type direction distance location
LOC110516351 LOC106605237 coding downstream 30442 26831176 ~ 26881042 (-)
LOC110516341 LOC106582531 coding downstream 93555 26812466 ~ 26817929 (-)
LOC110505184 LOC106582443 coding downstream 175015 26729074 ~ 26736469 (-)
LOC110516285 LOC106582421 coding downstream 196020 26691738 ~ 26715464 (-)
LOC110516273 NA coding downstream 261494 26647025 ~ 26649990 (-)
LOC110516475 NA coding upstream 4685 26928593 ~ 26978577 (-)
LOC110516606 LOC106605168 coding upstream 84279 27049992 ~ 27064472 (-)
LOC110516631 LOC106582601 coding upstream 105201 27070914 ~ 27097259 (-)
LOC110516644 LOC106582613 coding upstream 132827 27098540 ~ 27103054 (-)
LOC110516667 LOC106582624 coding upstream 145371 27111084 ~ 27127488 (-)
G240546 LOC105031101 non-coding downstream 5392 26905117 ~ 26906092 (-)
G240601 NA non-coding downstream 20312 26889876 ~ 26891172 (-)
G240590 NA non-coding downstream 33468 26877236 ~ 26878016 (-)
G240588 NA non-coding downstream 36836 26874125 ~ 26874648 (-)
G240579 NA non-coding downstream 49517 26861762 ~ 26861967 (-)
G240630 NA non-coding upstream 15697 26981410 ~ 26981767 (-)
G240557 LOC106582493 non-coding upstream 26754 26992467 ~ 26994270 (-)
G240632 NA non-coding upstream 31347 26997060 ~ 26997405 (-)
G240559 NA non-coding upstream 35356 27001069 ~ 27001515 (-)
G240464 NA other downstream 236451 26674592 ~ 26675033 (-)
G240409 NA other downstream 341962 26569101 ~ 26569522 (-)
LOC110515750 LOC106582146 other downstream 1086727 25822812 ~ 25825108 (-)
LOC110515384 LOC106582009 other downstream 1675117 25171287 ~ 25236536 (-)
LOC110515208 LOC106581894 other downstream 1945276 24936516 ~ 25052970 (-)
LOC110516678 LOC106605187 other upstream 189855 27154680 ~ 27159987 (-)
G240906 NA other upstream 218947 27184660 ~ 27185105 (-)
G242021 LOC106582922 other upstream 1289444 28205275 ~ 28256509 (-)

Expression


Co-expression Network