G240557 (LOC106582493)


Basic Information

Item Value
gene id G240557
gene name LOC106582493
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26992467 ~ 26994270 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU274914
tactttacatgttgtcaacaatctaagtcAACTTGTCTTTACCTTTTCCAAACCACATCTTTGTCAGTCCTTCCTCGTGGTGACAAAACAGAATTATTACAGAAGTCAAATGACACTTGAAAAACATTACCAAAACTTGCTTCTATGTACAACTAGAAAATATTCTTATTGAATACAACCACcaggaacatacagtaccagctGACACAGCGCTGTAAAACAAAGAATTTACCAAAACTACTAACTACACTAGCTTCAGTTAAACAAAAGTCTCAGTATCATCATAAAACTCAATCCGGATTCAGAAAATGATATAAGAACCCATGGCTAATACTGTATGCTTTCCCCCATGTTTCTAGCGAAAATTGCTTTGTCACTCACCACCACCCATAATAGCCTTGACGTTGGAGTAAAGCGCTGTATCCTCATCGGACTCTGCTGCTGGCTTACCGGTCTCTTTCTCCTCATCCTTCCCCATATTCAcaccactcccctctcctccatcttcatccccttctttcttcttctctcttttgaTTTTGGCATAGTCTGACTCTGTGGTAGTGGTCTTCTTCTCTGCCTCCTCAGGAGTCTTCTTCTTCAGCAGGGAGTAGTTGATTCTGGCGTAGTCCACTTCATTTAGTTCTCCCCCTGTAGCAAATTTTCCCGCGGCTCCACTGGTCTGGGGCCCTCTATTTTCAGCTCCCTCGCTCAGCTCCAACTGCAGAGGGGTCTGTTCGCcccccacagcctgtcctgcaTCCGTCTGTTGGTCTTCACATGTCACCATCTCCAGGTTCATGAAAGGGCTTTTGCAGTCTGAGTACATTGGGATCCTCTCTTTTTTACCTTTTACATTTCCCTTTCAAACACAGGAAGATACAACAGATGGTGGCTGAGAGGGCTGCACCAACCACAAATGCAGTAATCAGTTTTAGGTCCGACAGCAAAGCTATAATGCCTTCCAATTCCTTCTCTCTTTGCTTTTCTTGGCTCTTATTTTGTGTGACCTGCAGCTTCTCTCTCACTACACCCACCGCATTGCTGCTGACACACTCCACAGTGGTGTTGTTGTGGTTTCCAACAGGCAGGCTGATGGTGCTGTTCACTGAGGAACCCAAAACTGATGTAGTGGGGCTGCACCTCTCTGTGTTGAGCTCCAGCAGTTTCCACACTATGTGGGGTGAGGGAACcccctgactgacacacacacaggtcatgaCCTCTGCCTGGTCCACACACCCAGAGCCAGGAAGA

Function

NR:

description
sialic acid-binding Ig-like lectin 5 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU274914 True 1257 lncRNA 0.46 4 26992467 26994270

Neighbor

gene id symbol gene type direction distance location
LOC110516475 NA coding downstream 13897 26928593 ~ 26978577 (-)
LOC110516494 NA coding downstream 52892 26933378 ~ 26939575 (-)
LOC110516351 LOC106605237 coding downstream 111425 26831176 ~ 26881042 (-)
LOC110516341 LOC106582531 coding downstream 174538 26812466 ~ 26817929 (-)
LOC110505184 LOC106582443 coding downstream 255998 26729074 ~ 26736469 (-)
LOC110516606 LOC106605168 coding upstream 55722 27049992 ~ 27064472 (-)
LOC110516631 LOC106582601 coding upstream 76644 27070914 ~ 27097259 (-)
LOC110516644 LOC106582613 coding upstream 104270 27098540 ~ 27103054 (-)
LOC110516667 LOC106582624 coding upstream 116814 27111084 ~ 27127488 (-)
LOC110516655 LOC106582635 coding upstream 133829 27128099 ~ 27151658 (-)
G240630 NA non-coding downstream 10700 26981410 ~ 26981767 (-)
G240617 NA non-coding downstream 20113 26934798 ~ 26972354 (-)
G240545 NA non-coding downstream 26754 26911484 ~ 26965713 (-)
G240615 NA non-coding downstream 34369 26920762 ~ 26958098 (-)
G240632 NA non-coding upstream 2790 26997060 ~ 26997405 (-)
G240559 NA non-coding upstream 6799 27001069 ~ 27001515 (-)
G240665 LOC106584575 non-coding upstream 111744 27106014 ~ 27106764 (-)
G240464 NA other downstream 317434 26674592 ~ 26675033 (-)
G240409 NA other downstream 422945 26569101 ~ 26569522 (-)
LOC110515750 LOC106582146 other downstream 1167710 25822812 ~ 25825108 (-)
LOC110515384 LOC106582009 other downstream 1756100 25171287 ~ 25236536 (-)
LOC110515208 LOC106581894 other downstream 2026259 24936516 ~ 25052970 (-)
LOC110516678 LOC106605187 other upstream 161298 27154680 ~ 27159987 (-)
G240906 NA other upstream 190390 27184660 ~ 27185105 (-)
G242021 LOC106582922 other upstream 1260887 28205275 ~ 28256509 (-)

Expression


Co-expression Network