G240324


Basic Information

Item Value
gene id G240324
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 27154686 ~ 27155500 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU274647
CTTATCAACATTAAAAGCACAGAAAAAAAGCTTTATTTTGTCACATGAATATAGAACCAGAACATACATATGGCAGCATATGAAATATCTTGTTAGTGTAGTGACAAATTGCTTTTTTGCTTTAGTAACCATCAATCCTCTCGAGTACAGGGTCAGGCTGGGAGGTGAAGAAGGGCACATTTATATAAAACATATACAAAAGTGATTGTTTTATAAGAGAGGTGTGTCCAACACCTTTATCATCATTACATCATACAATCCTGTTCATCCCATCTAGAATATCATTATACAGACATTATATGTGTAATGATGCTAAATGTACTGCATGAAATAGGTGAATAATGTGTGTGGACCATTATCTTCAAGTATATGCACTGATGAAGTAGCTAGGGATATTAAGTCTA
>TU274651
GGCAGCATATGAAATATCTTGTTAGTGTAGTGACAAATTGCTTTTTTGCTTTAGTAACCATCAATCCTCTCGAGTACAGGGTCAGGCTGGGAGGTGAAGAAGGGCACATTTATATAAAACATATACAAAAGTGATTGTTTTATAAGAGAGGTGTGTCCAACACCTTTATCATCATTACATCATACAATCCTGTTCATCCCATCTAGAATATCATTATACAGACATTATATGTGTAATGATGCTAAATGTACTGCATGAAATAGGTGAATAATGTGTGTGGACCATTATCTTCAAGTATATGCACTGATGAAGTAGCTAGGGATATTAAGTCTA
>TU274646
GGATAATCTAAATGTGCCACATAACTacttggtactgtatgtataatcaTGCAAAATTATATCAAGCGGATACCATATCATTGTGCCATTATCAGTCAAGCAGTATGTTCATGCTTGTCTTGTTATACAATGTAAGAGCTCTCTTCCACTCCATGACATAACGCTGATCCAAGCCATTAGTGCTAATGATCTGGACCAGAGCTATCCATGACATACCACACTGAGAGATGAACTCAGATGATCTCCAAGTAGATAGCTGTTTCAGTGTTATTGTCATTGTAGGCAGGGCTTTGTCTGTCTCTT
>TU274649
GGATAATCTAAATGTGCCACATAACTacttggtactgtatgtataatcaTGCAAAATTATATCAAGCGGATACCATATCATTGTGCCATTATCAGTCAAGCAGTATGTTCATGCTTGTCTTGTTATACAATGTAAGAGCTCTCTTCCACTCCATGACATAACGCTGATCCAAGCCATTAGTGCTAATGATCTGGACCAGAGCTATCCATGACATACCACACTGAGAGATGAACTCAGATGATCTCCAAGTAGATAGCTGTTTCAGTGTTATTGTCATTGTAGGCAGGGCTTTGTCTGTCTCTTGTTCCTCTGTCCACCGTGCCCCCttgactctctcctcctcttctc

Function

NR:

description
PREDICTED: sialoadhesin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU274647 False 404 lncRNA 0.34 1 27154686 27155089
TU274651 False 333 lncRNA 0.35 1 27154757 27155089
TU274646 False 303 lncRNA 0.40 1 27155153 27155455
TU274649 True 348 lncRNA 0.42 1 27155153 27155500

Neighbor

gene id symbol gene type direction distance location
si:dkey-24p1.1 LOC106582456 coding upstream 106010 27016458 ~ 27048676 (+)
irgq2 LOC106582554 coding upstream 140459 27012977 ~ 27014227 (+)
LOC110516537 LOC106582465 coding upstream 143605 27004845 ~ 27011081 (+)
LOC110516512 LOC106582493 coding upstream 160370 26981634 ~ 26994316 (+)
LOC118936488 LOC106582510 coding upstream 205937 26938805 ~ 26948749 (+)
LOC110505196 NA coding downstream 28283 27183783 ~ 27185128 (+)
LOC110516690 LOC106584585 coding downstream 29882 27185382 ~ 27195271 (+)
LOC110504003 LOC106605005 coding downstream 42369 27197869 ~ 27200027 (+)
LOC110505200 LOC106581694 coding downstream 48160 27203660 ~ 27205290 (+)
LOC118944508 NA coding downstream 83839 27239339 ~ 27239905 (+)
G240316 NA non-coding upstream 11164 27142470 ~ 27143522 (+)
G240304 NA non-coding upstream 22065 27130019 ~ 27132621 (+)
G240272 NA non-coding upstream 77609 27076865 ~ 27077077 (+)
G240242 NA non-coding upstream 104111 27050104 ~ 27050575 (+)
LOC110516464 lsr non-coding upstream 264299 26866410 ~ 26890388 (+)
G240329 NA non-coding downstream 6665 27162165 ~ 27162583 (+)
G240330 NA non-coding downstream 7828 27163328 ~ 27163528 (+)
G240331 NA non-coding downstream 8214 27163714 ~ 27164472 (+)
G240332 NA non-coding downstream 9050 27164550 ~ 27164988 (+)
G240333 NA non-coding downstream 9584 27165084 ~ 27165362 (+)
G240244 NA other upstream 102732 27051186 ~ 27051954 (+)
G239752 meox2 other upstream 826355 26327408 ~ 26328331 (+)
G239697 LOC106582257 other upstream 934503 26213642 ~ 26220183 (+)
G239026 NA other upstream 1613073 25540769 ~ 25541613 (+)
G238540 LOC106582009 other upstream 1955452 25195287 ~ 25199234 (+)
LOC110516767 LOC106605158 other downstream 101088 27240708 ~ 27264405 (+)
G241150 LOC106582751 other downstream 400672 27556172 ~ 27558532 (+)
LOC110516984 NA other downstream 559543 27705985 ~ 27723794 (+)
LOC110516993 LOC106605183 other downstream 591847 27725189 ~ 27749972 (+)
LOC110517275 LOC106583018 other downstream 1876211 28995823 ~ 29034924 (+)

Expression


Co-expression Network