G240329


Basic Information

Item Value
gene id G240329
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 27162165 ~ 27162583 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU274657
TGATACACAAATTGCAGCAACATTTCTCCTAGATATGACTTGAGAATCTTATTGTAATGTGTTGCGTGTAATTTACTTGTCTCTCTTCTATTGCAGTTCACCTTTCAGCTCACAGAAATACCCTTCGGGAACGTACAGAATGACTTACATCTTACGCAGAAAGGGGAGGGCAGGCCTCCAACTCCAATCCGATACACTGATCTCTTCGTGACTGTGGACAACGAGTCATTTGACAGCAGCCAGCATGAGTACTTCGCCCTGGCCAGTCGATGGGCACGCATCTACGCCCACCAGGCCTGCTAACGCATCTGCCCTCGCCACCTCCTGAGCCCCCAAGGCACCACAGGGTGGACAAAGACAACCTCTATGTGctctccttcatccctctctattGCTATATCATCTATATTGCCTTGGCT

Function

NR:

description
PREDICTED: protein NLRC3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU274657 True 419 lncRNA 0.49 1 27162165 27162583

Neighbor

gene id symbol gene type direction distance location
si:dkey-24p1.1 LOC106582456 coding upstream 113489 27016458 ~ 27048676 (+)
irgq2 LOC106582554 coding upstream 147938 27012977 ~ 27014227 (+)
LOC110516537 LOC106582465 coding upstream 151084 27004845 ~ 27011081 (+)
LOC110516512 LOC106582493 coding upstream 167849 26981634 ~ 26994316 (+)
LOC118936488 LOC106582510 coding upstream 213416 26938805 ~ 26948749 (+)
LOC110505196 NA coding downstream 21200 27183783 ~ 27185128 (+)
LOC110516690 LOC106584585 coding downstream 22799 27185382 ~ 27195271 (+)
LOC110504003 LOC106605005 coding downstream 35286 27197869 ~ 27200027 (+)
LOC110505200 LOC106581694 coding downstream 41077 27203660 ~ 27205290 (+)
LOC118944508 NA coding downstream 76756 27239339 ~ 27239905 (+)
G240324 NA non-coding upstream 6665 27154686 ~ 27155500 (+)
G240316 NA non-coding upstream 18643 27142470 ~ 27143522 (+)
G240304 NA non-coding upstream 29544 27130019 ~ 27132621 (+)
G240272 NA non-coding upstream 85088 27076865 ~ 27077077 (+)
G240242 NA non-coding upstream 111590 27050104 ~ 27050575 (+)
G240330 NA non-coding downstream 745 27163328 ~ 27163528 (+)
G240331 NA non-coding downstream 1131 27163714 ~ 27164472 (+)
G240332 NA non-coding downstream 1967 27164550 ~ 27164988 (+)
G240333 NA non-coding downstream 2501 27165084 ~ 27165362 (+)
G240340 NA non-coding downstream 10000 27172583 ~ 27173230 (+)
G240244 NA other upstream 110211 27051186 ~ 27051954 (+)
G239752 meox2 other upstream 833834 26327408 ~ 26328331 (+)
G239697 LOC106582257 other upstream 941982 26213642 ~ 26220183 (+)
G239026 NA other upstream 1620552 25540769 ~ 25541613 (+)
G238540 LOC106582009 other upstream 1962931 25195287 ~ 25199234 (+)
LOC110516767 LOC106605158 other downstream 94005 27240708 ~ 27264405 (+)
G241150 LOC106582751 other downstream 393589 27556172 ~ 27558532 (+)
LOC110516984 NA other downstream 552460 27705985 ~ 27723794 (+)
LOC110516993 LOC106605183 other downstream 584764 27725189 ~ 27749972 (+)
LOC110517275 LOC106583018 other downstream 1869128 28995823 ~ 29034924 (+)

Expression


Co-expression Network