G240951 (LOC106584591)


Basic Information

Item Value
gene id G240951
gene name LOC106584591
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 27277205 ~ 27286809 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU275344
aaatctcaacttaatccattttaaattcaagctgtaacacaacaaatgtggaaaaggtcaagtggTGAAGGCACTGTAGACTCCATTCCCAGACCACTGTAGACTCCATTCCCTAAAAACTACTACGTGGCTAATTTGAATAAGCCTCTGGCTGTCAGGCCCAAACATTTGGCCACAGGAAACACATCTATAACACATTCATCATTCATAAACAACCGCGTTTGTTATTCAAAGaatgtgtgttttatttttttgaagTGTCACAATAAGAAGTGATTTTATAAATCATTATCGTAGTTACAAAAACAACATCTCAGAAAGAAAACATTGCAACATGTACAAACTAGAAAATGTACCAAAAAAATGTACTAAATGTACATAATagaaattattatttcaattagctGTCTTTTTCCTGTGTCACTAGGCTATACAACATGATACAAAACATTTATGTACAAGACTGAGGTTGCAGTGAGAAAGACATCAATGAGATTGCATCTTCTCAAAAGAGTCCAAAGGAAATGTAGAAGAATAGGGGGGAAATTAAAGGCAATAAGTTAATAAGATGGTTTTATTGCAGGCAGGTTCTCAGAATTTGCAGCAGAAGCCACAGCCCTTGTTGTGACAGCAGTTGCAGCACCAACGGCACAGGGAGAGGTGGCTCTGACGCTTGAACCTGAAATGCTCCGGCAGACGCATGGACTCGCCGCCCGGCTGTTGATGTTCCCCAACTGGACTGTCAATGCTTCCAACCTCCTCCGTTAGCACCTCGGAGAAAGGAACAGCGGTGCTTTCAAGGATGAACATACATGCAAGGACGAGTACCACTGCAACTGCAACACTGAAGGCCTTCATTCTCGGTTTTGTTAGGAAGTTTATAGCCTATTTAAAAGTCTGGTTGAAATCAGTTGAAATTGAAGTGACAGTTTATGAAGAAGATCAGAACTCTTCAATTTTCCCAAAAAGCAACGCTCTCCAGCGCACAATTTTCAATGCACTAAAACGAGTCCAAAGTTGATTGATTGTTCTTTTGGTGTCAGCGGATGAGGGA
>TU275345
GCTATACAACATGATACAAAACATTTATGTACAAGACTGAGGTTGCAGTGAGAAAGACATCAATGAGATTGCATCTTCTCAAAAGAGTCCAAAGGAAATGTAGAAGAATAGGGGGGAAATTAAAGGCAATAAGTTAATAAGATGGTTTTATTGCAGGCAGGTTCTCAGAATTTGCAGCAGAAGCCACAGCCCTTGTTGTGACAGCAGTTGCAGCACCAACGGCACAGGGAGAGGTGGCTCTGACGCTTGAACCTGAAATGCTCCGGCAGACGCATGGACTCGCCGCCCGGCTGTTGATGTTCCCCAACTGGACTGTCAATGCTTCCAACCTCCTCCGTTAGCACCTCGGAGAAAGGAACAGCGGTGCTTTCAAGGATGAACATACATGCAAGGACGAGTACCACTGCAACTGCAACACTGAAGGCCTTCATTCTCGGTTTTGTTAGGAAGTTTATAGCCTATTTAAAAGTCTGGTTGAAATCAGTTGAAATTGAAGTGACAGTTTATGAAGAAGATCAGAACTCTTCAATTTTCCCAAAAAGCAACGCTCTCCAGCGCACAATTTTCAATGCACTAAAACGAGTCCAAAGTTGATTGATTGTTCTTTTGGTGTCAGCGGATGAGGGA
>TU275346
agtgtggctcagttggtagagcatgttgCTTACAATGccagagttgtgggtttgattcccaaggGGGACCAATACAAGAAGAAGAACAAAGAATGAGGTTAATACACTTacaGCAGGTTCTCAGAATTTGCAGCAGAAGCCACAGCCCTTGTTGTGACAGCAGTTGCAGCACCAACGGCACAGGGAGAGGTGGCTCTGACGCTTGAACCTGAAATGCTCCGGCAGACGCATGGACTCGCCGCCCGGCTGTTGATGTTCCCCAACTGGACTGTCAATGCTTCCAACCTCCTCCGTTAGCACCTCGGAGAAAGGAACAGCGGTGCTTTCAAGGATGAACATACATGCAAGGACGAGTACCACTGCAACTGCAACACTGAAGGCCTTCATTCTCGGTTTTGTTAGGAAGTTTATAGCCTATTTAAAAGTCTGGTTGAAATCAGTTGAAATTGAAGTGACAGTTTATGAAGAAGATCAGAACTCTTCAATTTTCCCAAAAAGCAACGCTCTCCAGCGCACAATTTTCAATGCACTAAAACGAGTCCAAAGTTGATTGATTGTTCTTTTGGTGTCAGCGGATGAGGGA

Function

NR:

description
hepcidin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU275344 False 1054 lncRNA 0.40 3 27277205 27278598
TU275345 False 627 lncRNA 0.44 4 27277205 27286809
TU275346 True 583 lncRNA 0.47 4 27277205 27285324

Neighbor

gene id symbol gene type direction distance location
LOC110516750 LOC106582677 coding downstream 43227 27229635 ~ 27233978 (-)
LOC110516735 LOC106582654 coding downstream 48702 27212189 ~ 27228503 (-)
lim2.5 LOC106605161 coding downstream 65435 27206115 ~ 27211770 (-)
LOC110516678 LOC106605187 coding downstream 117218 27154680 ~ 27159987 (-)
LOC110516655 LOC106582635 coding downstream 125547 27128099 ~ 27151658 (-)
LOC110516838 LOC106582709 coding upstream 237458 27524267 ~ 27526325 (-)
LOC110516862 LOC106582717 coding upstream 255755 27542564 ~ 27549343 (-)
LOC110516872 LOC106582751 coding upstream 267220 27554029 ~ 27564456 (-)
LOC118944661 NA coding upstream 306260 27593069 ~ 27609600 (-)
LOC110516971 LOC106582842 coding upstream 324276 27611085 ~ 27658858 (-)
G240696 NA non-coding downstream 110924 27165801 ~ 27166281 (-)
G240695 NA non-coding downstream 111647 27165108 ~ 27165558 (-)
G240694 NA non-coding downstream 112405 27164489 ~ 27164800 (-)
G240691 NA non-coding downstream 113809 27163187 ~ 27163396 (-)
G240960 NA non-coding upstream 2486 27289295 ~ 27289513 (-)
G240966 NA non-coding upstream 13134 27299943 ~ 27300330 (-)
G241015 NA non-coding upstream 90673 27377482 ~ 27472982 (-)
G241050 NA non-coding upstream 137461 27424270 ~ 27424578 (-)
G241100 NA non-coding upstream 223819 27510628 ~ 27517043 (-)
G240906 NA other downstream 92100 27184660 ~ 27185105 (-)
LOC110516667 LOC106582624 other downstream 164583 27111084 ~ 27127488 (-)
LOC110516631 LOC106582601 other downstream 192145 27070914 ~ 27097259 (-)
G240464 NA other downstream 602172 26674592 ~ 26675033 (-)
G242021 LOC106582922 other upstream 968348 28205275 ~ 28256509 (-)
LOC110517114 pnrc2 other upstream 988963 28275767 ~ 28280077 (-)
LOC110517222 NA other upstream 1432645 28719454 ~ 28725294 (-)
G242539 LOC106582989 other upstream 1440161 28726970 ~ 28730375 (-)
LOC110517244 LOC106582991 other upstream 1494791 28781383 ~ 28786278 (-)

Expression


Co-expression Network