G241100


Basic Information

Item Value
gene id G241100
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 27510628 ~ 27517043 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU275505
CTCCCTctgatatattttatttttttaactccaCTTCTATAGATTTGGGGGGAAAAATTGTCCACACACTTAGAAAGGACaaaaacagagacagaacagagatcaAATGAATCAAAAGAGTCGTCATAATCATCATCGCTTCACTGCACAGAAATATGTCAAGATGGAAGACGATGCTGTTTGTGTTCCTCTGTTTTGTTCAGTAAGTTATATCGATGCAATCTTGAAAAGTCAACACAGACAGAAATAATAATGTTGAGGTCCAGGGGTAGATTGAAACCAACATGCCTGCCATGTGAAGGTCAgataatccacacacacacacacggacacacacactcacaaatcaATAACACAGATTTACCAGGGTTGGAACCCGGCATACAGAGAGGTGGCAAGGCAGCAGGCAGTGGGATTGGCATGGGGGGGGCACAGGTGGAAGGTTTTCTCCACAttgagggaaaggaggagggaggaggaagtgggCCAGAGGtgcatcgagagagagagatgggcatgACATCTCCATACGATGTCCGCAAACACTAACCAAGCATTCTAGAGTAGATTCATCCACTGGATTGCTAAAACAACCTAATATTTGTTATTAGTTCTCGCACTGACAAAAATGTCATTTGTCTTTGTTAATTGTTATTACCTGATTGTCATAGTTTTTCAGAAGTTTCAAAATTGTTCTGGTGAAACAACAGTGTCATGACAACCCAATCTTATATTGTGTCATAAATTCAAATCTATACATCTCACATTAATAGGACAGTTTCAGACAGTTTGCGACTTAGTCACACCGTACAGGTTCTCTCCCATTTTATCCTATGAACACAAGCCAGAACATCACTTGATGATGTCATTCGACAAGAAAAATATATAGTTCCATTGTCAGTTTTCGCCATGGCAACCAATATTTACCCAGTTGATTGACAGGCAAAATGTCAGATTTGTGCTGGTGACTCACAAAGGCCAAGTAAAGGGGCACTCAGTGTTGGAGATGTTAGGCAGGCTTCTAATGACTAAGGAGGCTGGCTGGTGGGCACCTCCATTGTTGCCTAGTAGTGTGCAGACTCCCTTGTTGTTCCAGCTGTAGATGGACCAACACTGGTACACTGTTAATTAGCCACTAGCTACATTCTTAGAAAGGAGAGGGTGATTGACAAGCAACCATCTGTAGTCCCTGCCGGTTTGTATGGATGGAGGTGGGAGTGAGTGACTGCTGCTCTTGCCTCTGTGGCTCGCAAGTATTACTTTAACCCACTatccacacaaacaaacactgtCAATGTTTTACATGAATAATAATATATCCTAATTAGAATTCAGAATAGAAACGATAAACTAACAAAATATCCACCTCTCTACATAACTCTATCTTTTTTTCCTATATATTCTGTCCTTGTGTATCTATCAATTCAACTACTACCAACTTACTATATAGTACCTTGCTACCTCATTCAACTTCCAAGTTGATTCTTCAGTGAGTCAAGGCAAATATCACTTCCTCTGCTTGGCAACATGTAGTCAGCATGTTAACCCAATAACGACCTATTTTCATCATGTAGCTCACCTCAGTCCAGCATGCTGTGTATCGATGCACTCATTAGTACAGCTAATGGAAATCTACTGGAGCTGAAATACACTCACAGCGTTGACTCTGCTCATAGGAATTGAACAGGCCTTTAGATTAGCTGGTGAACAATAGCTCATTAGGATAACACATTGTTATCTAGCTAGTGGACTATGGTGTGAAGGACAAAAGCTGGAGAGACCTGGCTGGTACTAAGGAAATCATTTATATATCAATGAGTCTGTCCCTCAATAAGACACATCTTCTTATGTATTACAGATACATAGTACCGGTACTGAAAATCTGACATATTTCTGATAATTTATCATCTTAGTTGAATATTGACCAAATACTATCATGGCTACGGTTCTATTCCCCTTTATCTCATCTTGCTCTATTGTACATCCTATCGTTCTAGACTCTACTCCTACCAAAGAGTCGGCTGTGTTTGTCAGACATAAGTCTCTAGATACACAGTATCGATAGGTACTGACATTTCCAAAATTAACATTTGGTATCAATCATTTAATTGAGTACAAAATATTTTTAGCACACACGGCTCGTCAGCTCTGGAGTAGCATGTATTCTTTTGTATCTCACATGGAATTACTTTTCATATTTATTTAAATACTTATTAACATCATCAGTATTATTATCGACACCAAAAAAGTTATAGCAGTTTAACCTTGCAGAGTAAAAcggacaggggaggagggggagtgggagggaggttTCACGACAGAAACATCTCTAACCGGTACATGCTATCAACAAGCGACAAGGAAGGAGGATGACTGGTCAACGCCTTCAAAGCAGGAGACATGATTGTTATTTCTACAGTCCCTTCCTGGTTACGAAAACTGTAATAGATGCTGATGGGTAATGTAGTTTGGCGGGATATTTTAGATTTTATTAGCCACTACATTAgccaccaaccaaggagggttgGATGTGGATAGACTGCCTCTAGTAACGGCATGGCCTCTGTACTGCATTATATTTACACACGGGACGGAGCACAAACCACCTTATCGATGGGGGGAGGGCGTGGGCAGAGGACGAGTTTTTTTtaaagaggggtggggggtggatggagggggGGTGAAGTGGGTCTTCTCACATGCTTCTTCTTGGTTGAGATCCCAAAGGGATGCACTAGAAGGGCAAAGGCTTTATAGAACCCCCACGGCCCACCCTTCATGTGTGTTTTGACATCATTCGCAGCAGCCGCGTCATATACACTGCCACATGGTTAAAAACGGAATAAAATGGTACTTGTATGATCATAGGGTCAAATGTCACAGGAGCAATGGGCCAATGGACAGCTTTCAACAAGGTCACGTGACCCTTATCAGAATAACGAATCATTTTCATTATAGAGTAGTTCCAACCGTAAATAGTTTGTTCCGAGTTTCCAAACGTCCATGAACATTATTGTAGATCAGTCATGATTTAGATTTGTAATAGTATTATCCTGGTGTTAAATATCTGTTTTCATCATCATCACAATTATCATTCTTACTAAACACATTATAGACATCACCATGGTGACcctcattggaaacaggatgaagagagagagtggtatggTGATGGTGGCAATATAGGTAGCGAGGGGGGAGTTGGTGTGGGTGTGAGATGCGATGCGTCAATGGCTCCTGGAATAATGCATATTATTTTTGTTTCACAGTGATGGGTTCGTAATTAAATAAATTCCTTCTTCCTTCCGCAGGCGGGATGGGACTTCTGGGAAAAGCTCTTAGACCTTCatcaggagagagacagagaggcaaagCCAAAAGCCAACACCCGCACTCACCCCCACGTTGACGGCCACGCCTCGCCCGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU275505 True 3427 lncRNA 0.42 2 27510628 27517043

Neighbor

gene id symbol gene type direction distance location
LOC110516750 LOC106582677 coding downstream 276650 27229635 ~ 27233978 (-)
LOC110516735 LOC106582654 coding downstream 282125 27212189 ~ 27228503 (-)
lim2.5 LOC106605161 coding downstream 298858 27206115 ~ 27211770 (-)
LOC110516678 LOC106605187 coding downstream 350641 27154680 ~ 27159987 (-)
LOC110516655 LOC106582635 coding downstream 358970 27128099 ~ 27151658 (-)
LOC110516838 LOC106582709 coding upstream 7224 27524267 ~ 27526325 (-)
LOC110516862 LOC106582717 coding upstream 25521 27542564 ~ 27549343 (-)
LOC110516872 LOC106582751 coding upstream 36986 27554029 ~ 27564456 (-)
LOC118944661 NA coding upstream 76026 27593069 ~ 27609600 (-)
LOC110516971 LOC106582842 coding upstream 94042 27611085 ~ 27658858 (-)
G241015 NA non-coding downstream 37646 27377482 ~ 27472982 (-)
G241050 NA non-coding downstream 86050 27424270 ~ 27424578 (-)
G240966 NA non-coding downstream 210298 27299943 ~ 27300330 (-)
G240960 NA non-coding downstream 221115 27289295 ~ 27289513 (-)
G240951 LOC106584591 non-coding downstream 223819 27277205 ~ 27286809 (-)
G241101 NA non-coding upstream 562 27517605 ~ 27517855 (-)
G241122 NA non-coding upstream 6657 27523700 ~ 27523927 (-)
G241126 NA non-coding upstream 10622 27527665 ~ 27527964 (-)
G241135 NA non-coding upstream 23320 27540363 ~ 27540616 (-)
G241311 NA non-coding upstream 24096 27541139 ~ 27541481 (-)
G240906 NA other downstream 325523 27184660 ~ 27185105 (-)
LOC110516667 LOC106582624 other downstream 398006 27111084 ~ 27127488 (-)
LOC110516631 LOC106582601 other downstream 425568 27070914 ~ 27097259 (-)
G240464 NA other downstream 835595 26674592 ~ 26675033 (-)
G242021 LOC106582922 other upstream 738114 28205275 ~ 28256509 (-)
LOC110517114 pnrc2 other upstream 758729 28275767 ~ 28280077 (-)
LOC110517222 NA other upstream 1202411 28719454 ~ 28725294 (-)
G242539 LOC106582989 other upstream 1209927 28726970 ~ 28730375 (-)
LOC110517244 LOC106582991 other upstream 1264557 28781383 ~ 28786278 (-)

Expression

G241100 Expression in all Baseline Samples

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G241100 Expression in each Bioproject

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G241100 Expression in each Sample
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Co-expression Network