G242083 (LOC106605000)


Basic Information

Item Value
gene id G242083
gene name LOC106605000
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 28251000 ~ 28254016 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU276573
GCTGACACTCTTGGGATATTTATTGGTAGTATGATGACACAAGAATACAGGCTGTTGCAGTTTTGACTGGGCCACAAATTGACCGCATTCCCTCTTGCACATGTAACTTCTTAGTCATTGCTACATCCTAATGCCAGAAATGAACTGCTTCTTGTATTTCACTCCTCAGTAACTCTAATTTAACCCCATGAAAACTAACTGGCTGAACCACCATACAaacacaacccactgggcacacactggtcgAATCAACGTCGTTTCCATATCATGTGGAACCAGCGTGGAaaagacattgaattgacgtctgtgcccagttggAATCCTCTCTTAGGGCAACAAAACCAACACTCCTTCCTTCCTTACATCTCCACTGCATCGGGCGGAGGCTTCTCGCCGTGCTTGTACACGCTCACGGTCACGTTGACCGTCTGAGTGCCGTACTGGTTGCGCACAAAGATGCTGTAGTTGCCCGTGTCCTCGCTAGTCACGTTGTTTACAGTCAGAGTGCTGCACTTATTCTCGTTGGCGATGTTGAACTGGCCCCCCGAGACGATGCCTTTGTCGTTCCTCAGCCAGAACATCTCTGGGGCAGGGTCACCATCAGTGAAGCAGGTCAGACAcagagactTCTCCATGATAGCCACCACATCTGGGAGCCCCTTGGTCACCCTGGCCCGATCTAAAGCAAATGAGAAGGACATTGACTCCCTTTTAATCATCCACAGGAAGCTCATTCAATCATTCCAGTGTACAGAAAATGCAATTATTAAGAAACAATGAAAGAGTAGGCCACTCACTTTTCTCAGCAACCGCCACTTGCCTTTGTAGCAAAAAGCAAGGGTAAAAACTggtaaatacatttgcaaatggtTTCATATCCATTGCCATACTATATGTCAACTCATCAATATTGAATAAAGAACCGTTTTCTGTTTGTCCATGTGAGAACAGTGATAGCAAATAGTACCTGCAATTGTTTGTGTTAGTGTTTACCACTGCAAGCCATGCTGGGCACGCACCATCAATATGGTACTGCACTTACTTCAACCTCTGGTATTCCAACAGAGCATCAGCAAAGGCTttttaaagagagaaagagagagataattcAATATAGATTACTGTAAAAGTATTTAGGAAGAGTGTAATATTCATTAACTGCCTGTCTCGGAAGATGTGAATGTAGATCAAGATTGCAGACACATTGAATTATAACTGAGTAATAATAGTccaattcggaagtttacattctaGCTCTGAAGACATTGACATGAATCTGAAGCAGTAAAACCCCCTGTAATGAAGCCTATTTCGCTTAACTGCTTTGAGACGATAGTGCTTTTTGAGTGAATCAGACTGGTCAGACTAACCTTGTCCAGATAGGTCTAGTGAGCGGGTGTGCTTTTCTTGACCATCAAACATCTCCAGAGTGTACTTCCCCTTATCGTTCTCCGTGGGCGCAAAGACCTCGACCCACAGCTTCTGCATACTGCTGCCAGGCTTACACCTCTCCAACTGGTCAATCCTACTCTCCCTGGTACATTGAAGTGCCAGCTGGTCTTCATGTAGCTGATATAGTACTTGAGAGAGCAGTAGAGCTTGAAGCCCATAGCAGTGCATTGAATCCTCACTGGGCCTGCAGACAGCGCTGTGccacagagagaggaaaaagtcAAATTCAGAGAGATGATACTCTGTGACAGAATGTCATTGTTGGGATATTGAC
>TU276574
GCTGACACTCTTGGGATATTTATTGGTAGTATGATGACACAAGAATACAGGCTGTTGCAGTTTTGACTGGGCCACAAATTGACCGCATTCCCTCTTGCACATGTAACTTCTTAGTCATTGCTACATCCTAATGCCAGAAATGAACTGCTTCTTGTATTTCACTCCTCAGTAACTCTAATTTAACCCCATGAAAACTAACTGGCTGAACCACCATACAaacacaacccactgggcacacactggtcgAATCAACGTCGTTTCCATATCATGTGGAACCAGCGTGGAaaagacattgaattgacgtctgtgcccagttggAATCCTCTCTTAGGGCAACAAAACCAACACTCCTTCCTTCCTTACATCTCCACTGCATCGGGCGGAGGCTTCTCGCCGTGCTTGTACACGCTCACGGTCACGTTGACCGTCTGAGTGCCGTACTGGTTGCGCACAAAGATGCTGTAGTTGCCCGTGTCCTCGCTAGTCACGTTGTTTACAGTCAGAGTGCTGCACTTATTCTCGTTGGCGATGTTGAACTGGCCCCCCGAGACGATGCCTTTGTCGTTCCTCAGCCAGAACATCTCTGGGGCAGGGTCACCATCAGTGAAGCAGGTCAGACAcagagactTCTCCATGATAGCCACCACATCTGGGAGCCCCTTGGTCACCCTGGCCCGATCTAAAGCAAATGAGAAGGACATTGACTCCCTTTTAATCATCCACAGGAAGCTCATTCAATCATTCCAGTGTACAGAAAATGCAATTATTAAGAAACAATGAAAGAGTAGGCCACTCACTTTTCTCAGCAACCGCCACTTGCCTTTGTAGCAAAAAGCAAGGGTAAAAACTggtaaatacatttgcaaatggtTTCATATCCATTGCCATACTATATGTCAACTCATCAATATTGAATAAAGAACCGTTTTCTGTTTGTCCATGTGAGAACAGTGATAGCAAATAGTACCTGCAATTGTTTGTGTTAGTGTTTACCACTGCAAGCCATGCTGGGCACGCACCATCAATATGGTACTGCACTTACTTCAACCTCTGGTATTCCAACAGAGCATCAGCAAAGGCTttttaaagagagaaagagagagataattcAATATAGATTACTGTAAAAGTATTTAGGAAGAGTGTAATATTCATTAACTGCCTGTCTCGGAAGATGTGAATGTAGATCAAGATTGCAGACACATTGAATTATAACTGAGTAATAATAGTccaattcggaagtttacattctaGCTCTGAAGACATTGACATGAATCTGAAGCAGTAAAACCCCCTGTAATGAAGCCTATTTCGCTTAACTGCTTTGAGACGATAGTGCTTTTTGAGTGAATCAGACTGGTCAGACTAACCTTGTCCAGATAGGTCTAGTGAGCGGGTGTGCTTTTCTTGACCATCAAACATCTCCAGAGTGTACTTCCCCTTATCGTTCTCCGTGGGCGCAAAGACCTCGACCCACAGCTTCTGCATACTGCTGCCAGGCTTACACCTCTCCAACTGGTCAATCCTACTCTCCCTGGTACACAATGAAATAGAATATGGTAATAAAATTCAATAGAATATAATATTGTTTTTCTAAAAATCCAACAAAAGATACTTCCATTCAAGGCCATGACTATTTATGTCTGAGGGCTTTACTTGTTCAGTTCTAAGTTTGTTTGTAAAAGCCTGTACTATGTTTGGTCTTTTTCAAAGTGGTGAGATGAGATGGATTTGGGATTAAGGGCTCAGACTGTCTCACTAAGGAAGCTGTGGGGCGATGTGAAGAAAAACACAAATGCTAAAGCAACTCGAGTTAAAATTAGACAACAAACCATGTCGCTACAGCAGTGCCCTTACAGAAAAAATCACGTGAAAAATCACGATTTCACATGTGTAGTTTTGTGTTATCACATGTCGAGTTACATGTtgtcacattaacttcacataagatcacatgtgtttttggaacactccACCTGTGTTCAGGTGAAATTCATGTGTTTTTTCCATGTTGGGTTGTCACCAGCTCTCATAATGGAGAGGTACAGGATGTGCAGGCTCTTGCTCCAGACAGGCaccaac

Function

NR:

description
PREDICTED: M-protein, striated muscle-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU276573 False 1726 lncRNA 0.45 3 28251000 28254016
TU276574 True 2082 lncRNA 0.43 2 28251596 28254016

Neighbor

gene id symbol gene type direction distance location
si:ch211-107n13.1 LOC106582885 coding downstream 463520 27769884 ~ 27787480 (-)
ago1 LOC106582818 coding downstream 568083 27659143 ~ 27682917 (-)
LOC110516971 LOC106582842 coding downstream 592142 27611085 ~ 27658858 (-)
LOC118944661 NA coding downstream 641400 27593069 ~ 27609600 (-)
LOC110516872 LOC106582751 coding downstream 686544 27554029 ~ 27564456 (-)
LOC110517114 pnrc2 coding upstream 21751 28275767 ~ 28280077 (-)
LOC110517198 LOC106582967 coding upstream 89728 28343744 ~ 28353662 (-)
LOC110517222 NA coding upstream 465524 28719454 ~ 28725294 (-)
LOC110517244 LOC106582991 coding upstream 527580 28781383 ~ 28786278 (-)
rspo1 LOC106605132 coding upstream 637404 28891420 ~ 28921524 (-)
G242045 NA non-coding downstream 42321 28207295 ~ 28208679 (-)
G242043 NA non-coding downstream 46158 28204634 ~ 28204842 (-)
G241970 NA non-coding downstream 57191 28104707 ~ 28193809 (-)
G242022 NA non-coding downstream 70723 28175798 ~ 28180277 (-)
G241968 NA non-coding downstream 147981 28102143 ~ 28103019 (-)
G242078 NA non-coding upstream 18661 28272677 ~ 28297190 (-)
G242092 NA non-coding upstream 43288 28297304 ~ 28306937 (-)
G242076 NA non-coding upstream 56839 28310855 ~ 28333370 (-)
G242121 NA non-coding upstream 83367 28337383 ~ 28340093 (-)
G242126 NA non-coding upstream 115128 28369144 ~ 28369386 (-)
G240906 NA other downstream 1065895 27184660 ~ 27185105 (-)
LOC110516678 LOC106605187 other downstream 1092336 27154680 ~ 27159987 (-)
LOC110516667 LOC106582624 other downstream 1138378 27111084 ~ 27127488 (-)
LOC110516631 LOC106582601 other downstream 1165940 27070914 ~ 27097259 (-)
G240464 NA other downstream 1575967 26674592 ~ 26675033 (-)
G242021 LOC106582922 other upstream 1141 28205275 ~ 28256509 (-)
G242539 LOC106582989 other upstream 472954 28726970 ~ 28730375 (-)

Expression


Co-expression Network