G242121


Basic Information

Item Value
gene id G242121
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 28337383 ~ 28340093 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU276619
GGCTTGAATGTATAGCCAGGAATCTAAGAGTGAAGCATGGGAAGTTGCTGTACTGGACAGATGGCTTACTTACTAGGTTCCCGCTTGTCTACCGTCTGAAGATACTATAGGCTGTTGTTGGAGACTCCATAGCCCCCATGagagatgtttggtgcagttaATCTGATTTTTGATGATCGTGTTATATATAGGCAATGTGATGGGAGTTTATTTTGAAATCAGTTACTGGTTCTGGTATCCCCCAAACAACATAACGCCATGGCACACAACTCTTTCAgatctatgttttttttttactcttgtAATGCAATCAATGGGTCATGTCCGATTTCATACTCTGGTGCTTCCCCTCTGTAATTAAGTTATCTCTGGCAGTTGACAACATTTGTATCCATTTACAAGAAATCAATTACTCTGGCTTGTGGCAATTgaagtcagtcaattcaggaagtgatatGAATTTTTAAAATCCAAACTTGTCACATAAATAGCGTCTCCTTTTCAGAAAATAGATTCCCTTTTTTCAATCATTCAATTGGAATTTCAGTTAACTTCTAAATTGACTGCCTCAATTTGAAATGAGCTCAAACCTGATTACCACAGATGTTAagggtacagttgaagtcggaagtttacataaacttaggttggagtcattaaaacttgtttttcaaccactccacatgtttcttgttgacaaactatagttttggcaagtcggttaggacatctactttgtgcatgacacaagtacttatttcaacaattgtttacagaattATTTCACTTGcagtataattcactgtatcacaagtccaatgggtcagaagtttacatacactaaattgactgtgcctttaaacagcttgaaaaattccagaaaatgatgtcatggctttagaagcttctgataggctaattgagattatttgagtgaattggaggtgtacctgtggatgtatttcaaggcctaccttcaaactcagtgcctctttgcttgacattatgggaaaatcaaagaaatcagccaagacctcagaaaaaacattgtaaacctccagaagtctggttcatcattgtgagcaatttccaaaggcatgaaggtaccacgttcatctgtacaaacaatagtacgcaagtataaacaccatgggaccacgcagccatcataccgctcaggaaggagacgtgttctgtctcctagatatgaacATACTTTGGaatgaaaagtgcaaataaatcccacaacaacagcaaaggcccttgtgaagatgctggaggaaacaggttcaaaagtatatccacagtaaaacgagtcctatatcaacataacctgaaaggccgctcagcaaggaagaagccactgctccaaaaccgccataaaaaagccagactacggtttgcaactacacatggggacaaagatcgtactttttgaagaaatgtcctctggtctgatgaaacgaaaataaaactgttggccataatgaccattgttatgtttggaggaaaaaggggtagacttgcaagccgaagaacaccattccaactgtgaagcacaggggtggcagcatcatgttgtgggggtgctttgctgcaggagggactggtgaacttcaaaaaattgatggcatcatgaggatggaaaattatgtggatattttgaagcaacaagttcatcagtcaggaagttaaagcttggtcgcaaatgggtcatccaaatggacaatgaccccaagcatacttccaaagttgtggcaaaatgtcttggcaaagtgggtggggttatatccttcctgtttggccctgtccgggggtgtcctcggatggggccacagtgactcctgacccctcctgtctcagcctccagtatttatgctgcagcagtttgtgtcggggggctagggtcaatttgttatatctggagtacttctcctgttctatccggtgtcctgtgtgaatttaattatgctctctctaattctctctttctttctctctctcggaggacctgagccctaggaccatgcctcaagactacctgacatgatgattccttgctgtccccagtccacctggccgtgctgctgctccagtttcaactgttctgtctgtgattaattattatttgaccatgctggtcatttatgaacatatgaacatcttggccatgttctgttataatctccacccagcacagccagaagaggactggccaccccacatagcctggttcctctctaggtttcttcctaggttttggcctttctagggagtttttcctagccaccgtgcttctacaacagcattgcttgctgtttggggttttagggtttctgtacagcactttgagatatcagctgatgtacaaagggctatataaattaatgtgatttgattaaggacaacaaagtcaaggtatgggagtggctatcacaaagtcctgacctcaatcctatagaacatttgtgggcagaactgaaaaagcatgtgcgagcaaggaggcctacaaacctgactcagttacaccagctctgtcaggaggaatgggccaaaattcacccaatttattgtgggaagcttgtagaaggctacccgaaacgtttgacccaagttaaacaatttaaaggaaaatactaattgagtgtatgtaaacttctgacccactgggaatgtgatgaaggaaattaaagctgaaataaatcattctc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU276619 True 2711 lncRNA 0.42 1 28337383 28340093

Neighbor

gene id symbol gene type direction distance location
LOC110517114 pnrc2 coding downstream 57306 28275767 ~ 28280077 (-)
si:ch211-107n13.1 LOC106582885 coding downstream 549903 27769884 ~ 27787480 (-)
ago1 LOC106582818 coding downstream 654466 27659143 ~ 27682917 (-)
LOC110516971 LOC106582842 coding downstream 678525 27611085 ~ 27658858 (-)
LOC118944661 NA coding downstream 727783 27593069 ~ 27609600 (-)
LOC110517198 LOC106582967 coding upstream 3651 28343744 ~ 28353662 (-)
LOC110517222 NA coding upstream 379447 28719454 ~ 28725294 (-)
LOC110517244 LOC106582991 coding upstream 441503 28781383 ~ 28786278 (-)
rspo1 LOC106605132 coding upstream 551327 28891420 ~ 28921524 (-)
dnali1 dnali1 coding upstream 694835 29034928 ~ 29039438 (-)
G242076 NA non-coding downstream 4013 28310855 ~ 28333370 (-)
G242092 NA non-coding downstream 30446 28297304 ~ 28306937 (-)
G242078 NA non-coding downstream 40193 28272677 ~ 28297190 (-)
G242021 LOC106582922 non-coding downstream 80874 28205275 ~ 28256509 (-)
G242126 NA non-coding upstream 29051 28369144 ~ 28369386 (-)
G242127 NA non-coding upstream 30877 28370970 ~ 28371221 (-)
G242129 NA non-coding upstream 32601 28372694 ~ 28372894 (-)
G242133 NA non-coding upstream 43064 28383157 ~ 28383992 (-)
G242182 NA non-coding upstream 86912 28427005 ~ 28427289 (-)
G240906 NA other downstream 1152278 27184660 ~ 27185105 (-)
LOC110516678 LOC106605187 other downstream 1178719 27154680 ~ 27159987 (-)
LOC110516667 LOC106582624 other downstream 1224761 27111084 ~ 27127488 (-)
G242539 LOC106582989 other upstream 386877 28726970 ~ 28730375 (-)
G242796 NA other upstream 605648 28945741 ~ 28946292 (-)
G243154 NA other upstream 792223 29132316 ~ 29152629 (-)

Expression


Co-expression Network