G242539 (LOC106582989)


Basic Information

Item Value
gene id G242539
gene name LOC106582989
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 28726970 ~ 28730375 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU277045
TGCGATTACACAGAGATGTGAACAACGTCAGGGATTGTGTGGACTTGATGCGGATATGAATGCCTGAGGTAAACATACTGTTGTCTATTCCCTTTAAAACAGCACATGTACACAGCCTCTGATTTAAATTAATCCCAATTACATAACGGAATACTGGTTTAAACTGAACACATGTTGCAATCAACACTTTCTGACTGTTTAAATCAGAGTGGTTAAGCACAACACACTATCTTAATGCATTTGATTTCTGTTTAccacatacatttgtatatattttttctcatctGGTGGTTTCACAATAGTAAGCAACAAAGGAAAACGGTTTGGTTTTTGAATGAAGACAAAATACCTTTTCTTGTATATACGTTTTATGTAAGTAATAAAATATTACTATAACATAAATAGGAGAAATGTGACTTTGCAGTCTACATTTAGCAATCAACATACAACCAATGTAGTGAACAAAACATATTGAAATCCACTGCAACATAACCATTAACCGAGCCAAACAAAAAGCTCCAAACACATTTaggaaataaatatatatataaatggtcAGATTCATAAATGAAATCATATTAAAATATCTTCTTGGAATTAGTAAGTGTACAAAACTGccggaaaaacaaaacaaaccaacaacaaaaaaatatctcAGAACAAATACATGTTTACATATTCGACATATTTACACATCGGAAATAATCCTGGCAACATTTTATTTCAAACACCTTTTTGAAGAAAGTTTTTTCCCGCTGTATCGAATAGCACTGTCTGCAGTACGCAATTGTACTATAGGCTACTGTCCATCAAAATGTACCAGAGCCTTGAGAAATGACACGCAACGCACGAGTAGGCTAGTTAATCAGATTTTTTCCTTTCTTCTCCATATccgaaaaaatatatatatatgtaaaacagGTCCCTTCATCACTTTTCATTCGAGAATGTTCTGAAATTATCCGTATATAGTGTTTATAATACAATAATAGGAATGGTATAAATTAATGGGGTGTAGCATTGGCTACCTTTCAGATCAATATAGAAGGTAAAGAATTCAAGTTCTACTTTTTATTATGATATAAAGAATGAGAACAGCGTGACACTTCGACCTGGGGCACTGAAGTTACCTGAGAATATCACTTTCATTTCGTATTAAACCAATCTCTTTCCAAAAGGTGGTTGGAATAGCTTGGCAGTTAGCAATGCAAGTTGCTGACGGTGCCCTGGAGTGATTTTAGGAACCTGTAAACATGAAAATAGTGAGTAAAGGCCTACCTCAAAACAAATTCTGAAAACAAAACGAATATAAAATTGCAATGATCATTTCAACGAAAGAATAAGTGCTCCATACAAAAGGAAAATAACAATCAAAACAAATACTGAAAACCGACAAGAAACACATGTTTCATAAAGTATTCATCCATATTGCCCTTTTTAGCGTCTGTTGCTATCTGCAAAGCATACATGTTTTAAGGCTGCCAGACGTGAGCTGTCCTGCTGCATTCGTCAATTTTGAAATGCATCTGACATTTAAGTGTGGGGATTTTTGTCATTCAACGGGTGCCATAATTTCCATCATCTTTTCACAAACTCCTCTGGCCAGATGACGTAGTGTCAACAGTAGGAGTAATGGAGGCGTTTTTGATGAGTTACAGTACACTAATAAAATGAGAGAAACAATAAAAACAGTCTTCAGAACAGAAGAGACACTGAAGTTAAAATAttccaaacaaatcaaacatcaCAATTAATAGAACAAAGCGAAAGAATAGGCTTATAATTAGAAATATTGGTTAATCGGTTTTAAGCCTGAAAAGCAAAatgttcattgtgtgtgtgtctcctttgTTGATCATTTTCAGGCAACCACCTCGCACTGTGGTGAGCGCCATCAGTTCAAGACACCACTTGCAACATTTAATCGTTACCCTTTGAACAGCCACGAAACATCGAATTTACTTTACCTCCTCCATAGAATTTTGGCAAATAAAGATATTTGTTTCATTTAAAATGTGAACGAAATCAATTCAGTAATAGTGTATGTTTTTCTTGTCAACCATTTTCCATTCTACCTATTTGTTGTTGTAACTCAAGCTCCGGTTACTGGGACAAAACTCATCTGTCTGTCCAACTTTGCcgtgtctctgttctctctcagtAAAACAAAATGAAATACTGTAAACTCCATAGTCCTTTCCCTTTTTTTCTTGTTTCCCCCGAAATTGTAGGATTGTTCATGAAAACAGTCACTGCACAGGACTCTGTAATGTGTGGTGAAGAGGGGGTGTCTCCGCTTGAGAATATACGTCCTCCATATTCGGATGAGGGACCCCTATCGGCGTCATTCTTTTCTCTTTTTGTCTTCTGTTGCAAAACCAAACACGGACAACCTCTTTTTCTAATTGAAGAGAGACGGCTAAACTGGTGATTTCATGGGCAGAGGGCTTGGGACATTTTAAGAAATGATTTTCCAGCGCCCCTTTCACCCCAACTTCAATCGAGGTCCTCTTCTTTCTTTTCCTGCCCTGCGCAGCAATCTTGTCCAAATTGGTGGGGCTGCCAGTGTTTGAGTCTGTCTCCTCCAACCACTTGTTTAGCAGTGGCTTAAGTTTGCACATGTTCTTGAAGCTGAGCTGCAGTGCCTCGAACCTGCAGATAGTGGTCTGAGAAAAGACGTTTCCGTACAGGGTGCCCAAGGCCAAGCCCACGTCCGCCTGTGTAAAGCCCAGTTTGATCCTTCGCTGCTTGAACTGCTTGGCGAACTGCTCCAGGTCGTCGGAGCTGGGCGCATCCTCGTCTGAGTGGTCCTGGTGGTGGCTGAACGCCTGCTGGGGGGACTCCATCTGGTTGTCATGGCTACCTGTATCGTCGTGGAGCGGGTCCCGCATGCCGTGGTGCAGAGAGGCGGGCTGGGGACTTAGCATGGCGTTGAGGTTCGTGTATCCCGGCTGCGAATAGACTAGCGACTGGTGCCCGTTGGAGGCAGGAGACAGCGGGGACAAGTGGTGCGTCGTGGTTGGCGCCCACGACCCATGGTGGCTACTCTGCGTCTGCTGGTGCACCAGGTGAGATCTATGGTGGAAGCCGCTGCTCAGGTCCTCTCGGCTCGCCTGAACGCTGGCTTTGTTGTGCTCCTGTTGCCCGATATGGGTGCCGCTGGTCCAGTCGGTGTTGGAGGTGGGCAGCCACTGGTGGTGCGTCAGGCTCATCGGATGTCCGGTGTTGGTCGCCGCTAGCCCTTGCAAGTACTCGTGGTGCATCATTTTCTGCACCTCTCTGTAGGTCGTCCCCTGGTGCATCCTGTCCGAATCCGGATGCATGAGCGGGTTGGACGGTAAGGAGTTATTCCGCGGAATATACTGAGCTGTTGTAGCCATGGCTCCGACTTCGAAAACTGACGAGT

Function

NR:

description
POU domain, class 3, transcription factor 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU277045 True 3406 TUCP 0.42 1 28726970 28730375

Neighbor

gene id symbol gene type direction distance location
LOC110517222 NA coding downstream 1676 28719454 ~ 28725294 (-)
LOC110517198 LOC106582967 coding downstream 373308 28343744 ~ 28353662 (-)
LOC110517114 pnrc2 coding downstream 446893 28275767 ~ 28280077 (-)
si:ch211-107n13.1 LOC106582885 coding downstream 939490 27769884 ~ 27787480 (-)
ago1 LOC106582818 coding downstream 1044053 27659143 ~ 27682917 (-)
LOC110517244 LOC106582991 coding upstream 51221 28781383 ~ 28786278 (-)
rspo1 LOC106605132 coding upstream 161045 28891420 ~ 28921524 (-)
dnali1 dnali1 coding upstream 304553 29034928 ~ 29039438 (-)
LOC110517348 LOC106604987 coding upstream 465771 29196146 ~ 29201564 (-)
LOC110517416 LOC106605123 coding upstream 591656 29322031 ~ 29388582 (-)
G242367 NA non-coding downstream 122351 28604113 ~ 28604619 (-)
G242401 NA non-coding downstream 128466 28598187 ~ 28598504 (-)
G242398 NA non-coding downstream 131422 28595278 ~ 28595548 (-)
G242397 NA non-coding downstream 131724 28594992 ~ 28595246 (-)
G242374 NA non-coding downstream 137084 28546305 ~ 28589886 (-)
G242547 NA non-coding upstream 5507 28735882 ~ 28736388 (-)
G242585 NA non-coding upstream 42738 28773113 ~ 28773350 (-)
G242607 NA non-coding upstream 64626 28795001 ~ 28796190 (-)
G242657 NA non-coding upstream 99510 28829885 ~ 28833286 (-)
G242021 LOC106582922 other downstream 470461 28205275 ~ 28256509 (-)
G240906 NA other downstream 1541865 27184660 ~ 27185105 (-)
LOC110516678 LOC106605187 other downstream 1568306 27154680 ~ 27159987 (-)
G242796 NA other upstream 215366 28945741 ~ 28946292 (-)
G243154 NA other upstream 401941 29132316 ~ 29152629 (-)
LOC110517486 LOC106583166 other upstream 726106 29456450 ~ 29458390 (-)
G244338 NA other upstream 1358468 30088843 ~ 30129214 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00010917 pou3f1,LOC103364690 coding CM030133.1 CM030133.1 4290056 ~ 4291183 (-)