Gene
RNA
| Item | Value |
|---|---|
| gene id | G242578 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 28763953 ~ 28765227 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| Spore coat assembly protein exsA |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU277084 | False | 239 | lncRNA | 0.33 | 2 | 28763953 | 28765227 |
| TU277086 | True | 286 | lncRNA | 0.33 | 2 | 28764486 | 28765227 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| pou3f1 | LOC106582989 | coding | upstream | 33554 | 28726940 ~ 28730399 (+) |
| LOC110504005 | LOC106605136 | coding | upstream | 397217 | 28352198 ~ 28366736 (+) |
| LOC110517184 | LOC106582959 | coding | upstream | 420492 | 28341344 ~ 28343461 (+) |
| rhbdl2 | LOC106605138 | coding | upstream | 429073 | 28322929 ~ 28334880 (+) |
| akirin1 | LOC100499583 | coding | upstream | 442634 | 28304190 ~ 28321319 (+) |
| LOC110517255 | LOC106605133 | coding | downstream | 34006 | 28799233 ~ 28841059 (+) |
| LOC110517275 | LOC106583018 | coding | downstream | 230596 | 28995823 ~ 29034924 (+) |
| LOC110517283 | LOC106583031 | coding | downstream | 274241 | 29039468 ~ 29045846 (+) |
| si:ch211-1i11.3 | LOC106583027 | coding | downstream | 283370 | 29048597 ~ 29083292 (+) |
| map7d1a | LOC106583045 | coding | downstream | 339278 | 29104505 ~ 29184360 (+) |
| G242576 | NA | non-coding | upstream | 504 | 28763139 ~ 28763449 (+) |
| G242556 | NA | non-coding | upstream | 21387 | 28741896 ~ 28742566 (+) |
| G242453 | NA | non-coding | upstream | 43611 | 28667857 ~ 28720342 (+) |
| G242412 | NA | non-coding | upstream | 151993 | 28611759 ~ 28611960 (+) |
| G242405 | NA | non-coding | upstream | 155550 | 28607942 ~ 28608403 (+) |
| G242606 | NA | non-coding | downstream | 30244 | 28795471 ~ 28796167 (+) |
| G242700 | NA | non-coding | downstream | 116197 | 28881424 ~ 28881637 (+) |
| G242703 | NA | non-coding | downstream | 118748 | 28883975 ~ 28884181 (+) |
| G242715 | NA | non-coding | downstream | 126377 | 28891604 ~ 28893051 (+) |
| G242731 | NA | non-coding | downstream | 148505 | 28913732 ~ 28914028 (+) |
| LOC110516993 | LOC106605183 | other | upstream | 1014227 | 27725189 ~ 27749972 (+) |
| LOC110516984 | NA | other | upstream | 1040159 | 27705985 ~ 27723794 (+) |
| G241150 | LOC106582751 | other | upstream | 1205421 | 27556172 ~ 27558532 (+) |
| LOC110516767 | LOC106605158 | other | upstream | 1499560 | 27240708 ~ 27264405 (+) |
| G240244 | NA | other | upstream | 1711999 | 27051186 ~ 27051954 (+) |
| G243679 | LOC107756720 | other | downstream | 903152 | 29668379 ~ 29690796 (+) |
| G244292 | LOC106583212 | other | downstream | 1367172 | 30132399 ~ 30137564 (+) |
| G244691 | NA | other | downstream | 1866543 | 30631770 ~ 30632533 (+) |
| G244851 | cep85 | other | downstream | 2100339 | 30865566 ~ 30874608 (+) |
