G242715


Basic Information

Item Value
gene id G242715
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 28891604 ~ 28893051 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU277227
CCAGGGAAAGCTAAACAAAACGTGACAGCGGTTGCTCAAAGATTAGTGACAAATGGTACTAAAACGTTTGTCGCTCTTGTCGTATCAGGCTGACAAGTAGCTGTGTAATGCAATGATTCTTTCCACTGACAGAGGTGTATATAGTACAGAACACAGATATGTCGGACCCTGTTGCAAACATACATGATTACTGAGCAGCTGTCGAGGGTTTACATGTAACCAGAGCCATATGATTATGGAAATATTGATGCGTTGATATATAACTGTGCCTTTACAATGGTCTCTCTCATCGTCTATATCAAATTTCCCATTCTACCAGATtgatacgtacacacacacacattaagctTACGTGCAGAAACACATACAATGTACCCACACCCACACAAGTATACATAGGCTTGTGTGACCACTACTTCACAAAAACATTTTGCTGAAATTTTGTAAAGacacagacacacgcagacatacactcagaacacacatacacaacgcACCCAGTTTTCAAATCTAAACTTTTTATGCTGAAGATACCAAAACATTATTCTACTTGAAATTAAGAACTAAGCTATTAAGTGGGTAACCTTTGTCTAACACCAGATCAGGATTTGAACTAAAGCCATCTAAACTTCCTCTATATTGTTGCTGGTTTGTTTTGGAGCGGATTCCCCTTCAAACCAAAAAAATTATTAAAATATGTTTTCCTTCAAAACCACACATTTGTTCCAGTGCCTTTCTTTTGTTTCATCAAAAAATATAATTAAAATAAAGAATCTTAATACTGTTCATTTTCTTTATATCACTTACAACAACATCTCCTTAGAAATATCTACTTGCTACCGTTCACAAAACATGAGTCAAGTCAACAATGAAAAATAGATTTTGAAAAGCACATCAGGGATTCTAATGGACTGAAGAGATCCTTGATCATTGTGAAGCCTCCATCTTGAAATGCTCATATTCATATTCAGTGTCTTCCACTGTTCAGCCACTGGGATCTCCATCTGCCAACTCTAAGATAAACCTGGGAGCGGTGAAATGAAACATGTTGACCCTACTGCAAGGCTTACAGTGGAACCCTCCACAGTGCAcattccccctcttccctccaagTCTGATAAGTCCAAGTCCTGTTCCTCATGTATTGCAGCAATCCTCCAGTTCTCTTACAGCATCTTCTAGAATGCATAGCAGCATTAATCCTTTTCTTCATCAGTTTGATATTGTCACCTCAgtccactgtctgtctcttaATAATGGCCAATGCAGGTGGGTGTTGCCTAGTTTTTTGTCCCTCCTTGTCCCCACCAAGACCCAGCGTGACTAAAGCCTAGGCTACAGTGCTAGGGGTAAGGCTGGGCGTGGTGGTGGCCTGGTTTTGGCCCTTTTTCCTCCTGCCGCCTCCCTTGCCACCCTCTCTGCCTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU277227 True 1426 lncRNA 0.41 2 28891604 28893051

Neighbor

gene id symbol gene type direction distance location
LOC110517255 LOC106605133 coding upstream 50545 28799233 ~ 28841059 (+)
pou3f1 LOC106582989 coding upstream 161205 28726940 ~ 28730399 (+)
LOC110504005 LOC106605136 coding upstream 524868 28352198 ~ 28366736 (+)
LOC110517184 LOC106582959 coding upstream 548143 28341344 ~ 28343461 (+)
rhbdl2 LOC106605138 coding upstream 556724 28322929 ~ 28334880 (+)
LOC110517275 LOC106583018 coding downstream 102772 28995823 ~ 29034924 (+)
LOC110517283 LOC106583031 coding downstream 146417 29039468 ~ 29045846 (+)
si:ch211-1i11.3 LOC106583027 coding downstream 155546 29048597 ~ 29083292 (+)
map7d1a LOC106583045 coding downstream 211454 29104505 ~ 29184360 (+)
thrap3a LOC106583094 coding downstream 363284 29256335 ~ 29286477 (+)
G242703 NA non-coding upstream 7423 28883975 ~ 28884181 (+)
G242700 NA non-coding upstream 9967 28881424 ~ 28881637 (+)
G242606 NA non-coding upstream 95437 28795471 ~ 28796167 (+)
G242578 NA non-coding upstream 126377 28763953 ~ 28765227 (+)
G242576 NA non-coding upstream 128155 28763139 ~ 28763449 (+)
G242731 NA non-coding downstream 20681 28913732 ~ 28914028 (+)
G242761 NA non-coding downstream 31491 28924542 ~ 28924848 (+)
G242763 NA non-coding downstream 31942 28924993 ~ 28925212 (+)
G242782 NA non-coding downstream 45012 28938063 ~ 28938407 (+)
G242828 NA non-coding downstream 74942 28967993 ~ 28968242 (+)
LOC110516993 LOC106605183 other upstream 1141878 27725189 ~ 27749972 (+)
LOC110516984 NA other upstream 1167810 27705985 ~ 27723794 (+)
G241150 LOC106582751 other upstream 1333072 27556172 ~ 27558532 (+)
LOC110516767 LOC106605158 other upstream 1627211 27240708 ~ 27264405 (+)
G240244 NA other upstream 1839650 27051186 ~ 27051954 (+)
G243679 LOC107756720 other downstream 775328 29668379 ~ 29690796 (+)
G244292 LOC106583212 other downstream 1239348 30132399 ~ 30137564 (+)
G244691 NA other downstream 1738719 30631770 ~ 30632533 (+)
G244851 cep85 other downstream 1972515 30865566 ~ 30874608 (+)

Expression


Co-expression Network