G242831


Basic Information

Item Value
gene id G242831
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 28969086 ~ 28969306 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU277344
CTTGTGGTCCAGTCAATAATGGTGTTGTGTTTTTGGAGCTAAGAAATCTCAAAACAACAGGAACATGGGGGGAATCAATGAGGAGAAGCTGTATTGACTCACTGTGATTTCCTGAAACCCACAGATGAATCGAAACAGTGCTGTGGGTAACTCTTCCAATGGAGCGGCCGTCCAGTTCTCTAGTGTCCATGGGAACAGAGAGGAGTTGAGTGGGGATACCT

Function

NR:

description
cathepsin L1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU277344 True 221 lncRNA 0.47 1 28969086 28969306

Neighbor

gene id symbol gene type direction distance location
LOC110517255 LOC106605133 coding upstream 128027 28799233 ~ 28841059 (+)
pou3f1 LOC106582989 coding upstream 238687 28726940 ~ 28730399 (+)
LOC110504005 LOC106605136 coding upstream 602350 28352198 ~ 28366736 (+)
LOC110517184 LOC106582959 coding upstream 625625 28341344 ~ 28343461 (+)
rhbdl2 LOC106605138 coding upstream 634206 28322929 ~ 28334880 (+)
LOC110517275 LOC106583018 coding downstream 26517 28995823 ~ 29034924 (+)
LOC110517283 LOC106583031 coding downstream 70162 29039468 ~ 29045846 (+)
si:ch211-1i11.3 LOC106583027 coding downstream 79291 29048597 ~ 29083292 (+)
map7d1a LOC106583045 coding downstream 135199 29104505 ~ 29184360 (+)
thrap3a LOC106583094 coding downstream 287029 29256335 ~ 29286477 (+)
G242828 NA non-coding upstream 844 28967993 ~ 28968242 (+)
G242782 NA non-coding upstream 30679 28938063 ~ 28938407 (+)
G242763 NA non-coding upstream 43874 28924993 ~ 28925212 (+)
G242761 NA non-coding upstream 44238 28924542 ~ 28924848 (+)
G242731 NA non-coding upstream 55058 28913732 ~ 28914028 (+)
G242882 NA non-coding downstream 67926 29037232 ~ 29038516 (+)
G242898 NA non-coding downstream 223420 29192726 ~ 29193219 (+)
G242890 NA non-coding downstream 225173 29194479 ~ 29195260 (+)
G242969 NA non-coding downstream 274301 29243607 ~ 29243843 (+)
G242972 NA non-coding downstream 275804 29245110 ~ 29245393 (+)
LOC110516993 LOC106605183 other upstream 1219360 27725189 ~ 27749972 (+)
LOC110516984 NA other upstream 1245292 27705985 ~ 27723794 (+)
G241150 LOC106582751 other upstream 1410554 27556172 ~ 27558532 (+)
LOC110516767 LOC106605158 other upstream 1704693 27240708 ~ 27264405 (+)
G240244 NA other upstream 1917132 27051186 ~ 27051954 (+)
G243679 LOC107756720 other downstream 699073 29668379 ~ 29690796 (+)
G244292 LOC106583212 other downstream 1163093 30132399 ~ 30137564 (+)
G244691 NA other downstream 1662464 30631770 ~ 30632533 (+)
G244851 cep85 other downstream 1896260 30865566 ~ 30874608 (+)

Expression


Co-expression Network