G243173


Basic Information

Item Value
gene id G243173
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 29193301 ~ 29195500 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU277713
CACATTAACCATAGCCCAACATCCTCACTTCCTGAACCCAGATGACAAAGCCTGGTGCTAACatgcgtcctttgtcctgatcttgtcaaCATTCTGATTGTGTCCACATTTTTTGACAGGTGTAGACAATCAAAATACACATTGTGAACTAATTGTAATCAGATCTTTCTGACCACATCCGGAggtagtcaggcaggcaggcatttaatttgtatttattttatttaacatttacataactaggcaagtcagttaagaaccaattcttatttacaatgacagcctacactgcATTGTATCTTACAAGTGTACAGATCTGGTTGGTGAAACAATTTAACTCATCATTATAGCCAAAGTAAAATGATTGACTAAGGATGACATTATTTTGAAACAATACCTCTCTTTAATACATGGAAGGACTAGGAAATATCGGCACAATGCTGAGAGAATGGACAGATAACACATTTTAATACCATTTaatattttaacaaacctaacgcaaTGGTCAATCTAAGTGCAGGCAATAGTGCTATAAGTTCAAGgtccctcactggccaatcagaacgtgctccaaGGCGAAATATGTAGTTGCTTCAGGTTGTATATTTACAGTTTTTTATGTATTGCCTTGGAATCAACTCCAATTCCAATGTTAGTCCATTGTAGTTTGTTAAATGGCTTACAGAAACGAAATAACAAACTATAGACCTATCCCATCTTTGCTAAATAGGCTAACTTGAACCcatttgcagtccacattgttctaaaTAATTGCATGGCCTCAATctcattcacactgatataggggctaggcctagtGTAAATTGCGTTATGGCGGAgcatggacatgccaaacatTGTCAATAGGCAAGATTAAATTCATTATTGATAAGGCCTAAAAAGAGAACAAATAATTATAATCAAATTCTAAACAAAAGGAAACAAATGGTTTTAAATAGGAAAATGGTATGTTTGAATCAATGTTATTGTTttgagtttggacacacctactcattcaagggtttttctttatttgtactattttctacattgtagaataatagtgaagacatcaaaactatgaaataacacatatggaatcatgtagtaagcaaaaaagtttCAAACAAAaccaaatataatttatatttgagattcttcaaagtagccaccatttgccttgatgacagctttgcacgctcttggcattctctcaaccagcttcacctggaatgcatttcaaataacaggtgtgccttgttaaaagttaatttgtggaatttatttccttcattatgcatttgagccaatcaggtgtgttgtgatcaggtagggttggtatacagaagatagccctatttggaaaaataacaagtcaatattatggaagaacagttcaaataagcaaagagaaacgacagtccatcattactttaagacatgaaggtcagtcaatccggaaaatgtcaagaacttcgtgttgtcgcaaaaaccatcaagccctatgatgaaactggctctcatgaagaccgccacaggaaaggaagacccagagttacctctgctgcagaggataagttcattagagttaccaggctCCAAAAATCCAGCCCAAATAGttcaacacatctcaacattaactgttcagtggagactgcgggaatcaggcctttatggccgaattgctgcaaagaaaccactactaaaggacaccagtaagaagaagagacttgcttgggccaagaaacatgagcaatggacagaccaaatttgagatttttggttccaaccaccgtgtctttgtgagacgcagagtaggtgaactgatgatctgTGCATGTATGGTTACCaccgtgaagaatggaggaggtgtgatggtgtgggggtgctttgttggtgacactgtcagtgatatatttagaattcaaggcacacttaaccagcgtggctaccacagcattccgcaGCGATAgaccatcccatctgttttgcgctttgtgggactatcatttgtttttcaataggacaatgacccaacacacctccaggcagtgtaagggctatttgacgaagaaggagagtgatggagtgctgcatcagatgacctggactccacaatcacccgaccttgtTACGCAGGGTGGAGCAGGTGAATCCAAgtgcagactcagacgaggagacaaGTGCAAGGTAACCGAGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU277713 True 2200 lncRNA 0.39 1 29193301 29195500

Neighbor

gene id symbol gene type direction distance location
dnali1 dnali1 coding downstream 153863 29034928 ~ 29039438 (-)
rspo1 LOC106605132 coding downstream 271777 28891420 ~ 28921524 (-)
LOC110517244 LOC106582991 coding downstream 407023 28781383 ~ 28786278 (-)
LOC110517222 NA coding downstream 468007 28719454 ~ 28725294 (-)
LOC110517198 LOC106582967 coding downstream 839639 28343744 ~ 28353662 (-)
LOC110517348 LOC106604987 coding upstream 646 29196146 ~ 29201564 (-)
LOC110517416 LOC106605123 coding upstream 126531 29322031 ~ 29388582 (-)
stk40 LOC106583156 coding upstream 216688 29412188 ~ 29443132 (-)
oscp1b LOC106583166 coding upstream 251519 29447019 ~ 29456324 (-)
LOC110517486 LOC106583166 coding upstream 260950 29456450 ~ 29458390 (-)
G243180 NA non-coding downstream 3793 29189223 ~ 29189508 (-)
G243144 NA non-coding downstream 81395 29111700 ~ 29111906 (-)
G243137 NA non-coding downstream 89206 29103850 ~ 29104095 (-)
G243132 NA non-coding downstream 103322 29089482 ~ 29089979 (-)
G242827 NA non-coding downstream 225440 28967594 ~ 28967861 (-)
G243257 NA non-coding upstream 88351 29283851 ~ 29286468 (-)
G243309 NA non-coding upstream 172487 29367987 ~ 29368444 (-)
G243322 NA non-coding upstream 186126 29381626 ~ 29386695 (-)
G243330 NA non-coding upstream 195088 29390588 ~ 29390843 (-)
G243154 NA other downstream 40672 29132316 ~ 29152629 (-)
G242796 NA other downstream 247009 28945741 ~ 28946292 (-)
G242539 LOC106582989 other downstream 462926 28726970 ~ 28730375 (-)
G244338 NA other upstream 893343 30088843 ~ 30129214 (-)
G244379 NA other upstream 978513 30174013 ~ 30177408 (-)
G244381 LOC106583245 other upstream 1003732 30199232 ~ 30199770 (-)
G244393 LOC106583245 other upstream 1016070 30211570 ~ 30217682 (-)

Expression


Co-expression Network