G243257


Basic Information

Item Value
gene id G243257
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 29283851 ~ 29286468 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU277798
CCAAAGTTCTTTTTAATTTACATCTGAAAAACATTGTCTACAGGAACCATTTAAAAAAGTTATTGCCCCAACCACATAGAATTGAACATGAAAGTGTCAACCACAACATTTATCATGTACATTAAAGAGTAGTGCCTCCCACAGCAAGACAAACAAATCCAAATAGTGCAACAGTCTactttttctagaattttttatAAACTATATTTTATTGAACAGCACAATTTTTTGGGGATCAAATTCAAATACCTTAGAAGTTGTTTTATTTTATATTCAACCAAAGTTTACTGTGTTGCACCCCACACATACTATTCAGCAATCAAAACTTAACAGACGTTGTACAAGGGGGAAAAGTCCCCATTCAATGAGAAAACCTATCACATCAAAGCATTGAGTGTGCCATGATCTAATCAATGCCGTGATATAATCAATCAccatttttttcttcatataCAAAGGAAGCATTAATTGCTACAAATAATTATAAATTGAGCCATTAATAAGTAGTACACACCCCCAACCCAAGTTAACAGTTTTGAAATGTACAAGATATAACAATCCAATAGAGGATTCTCAACAAACTAGACAAGATTAACACCCAGGTAGCCCATTGTGACTTTGCAGACAGGGTATGCCATTTTATTTAACAGTCTCTGtttcccagtggtgtaaagtatttaaatactttaaagtactacctaagtagttttttggggggagtatctgtactttactttaatgTTTATAATTTTGacttcactatattcctaaagaaaataatggacTTTTCACTCTGCACATTTTCCCTGAAACTCaaaagtactctttacatttcgaatgcttagccGGGGCAGtaaaattcacgcacttatctaGAGACCGCCCCTGGtcaaccctactgcctctgatctggcggactcataGAACACGTGCTTTGTTTGTTaattatgcctgagtgttggagtgtgcccctggctatccataaatttaaaaaacaaaaaaagggtgctgtctggtttgataaatataaggaattttaaattatttatccttttacttttgatacttaagtatatatatttttttaattaacttttgttacttaagtatatttaaaatcaaatacttttagacttttactcaagtagaattttactgggtgactttcaacttttacttgagtcattttcttttaagggATGACGATTGGgtcatttttccaccactgctgttTGCTCTTCTAGGGGACTGTGAGCATCTTGTTTCACTCCACAGTGCAGGTCTGTAGAATATAACCTTTGACCCAATTTGGTCCCATTGTCAGAGGGGTCACTTGCAAGATGCTGGACTAGCAAGACCACTATAAACCATACGGTCTAAACCATATAGACCATTAGACACTGGCCCAGTTGTCATGTAAAAAGGGGATTCGATTGCCTCTAGCTGTACTTTAGCCTGGTAGAATCCAGAAACATGCTGCAAAGTTGCATGTTACGTAGTTGAATGTTATGTATTTGAATCAGCAGGTTACGTATTTGAATCCGTAGGTTACATTGTTGAATCCTAAAACTTGCTAAAGTCAACAGTATACTTACTGTATTTTCTGCAGTTGATGGCTAAACTGGTCTAAAAAGATATCTACTGTGTAATAGTGTACGATTTATCACTACcgtataataaataaataaaatgtttatcTTCTAGTATAGTATTCATCCATTTGGCCTCAAATGTCATTTCATTATATAAATATGTGTCCTACATATTTTATTAAGTCTAAGGCACAAAAAGATCCTCCTGTCATGCTCTGTAAAAATGTGACTTTTTTGCGTCAAgatataaaaatgtttttaaaaatgttatgcaATGTTGCATCAGCCCTGTACTAAGAGGCATAACACCCCACAATGTACTGTTCATCACGCTAACCTATCAAGCGCAGAGGTTGGTTACGTAGATTTCCTATTCCAACACAGCAGTTCACTGTCTAACAGTGTTTCTACTATAAGCAGATAAAACACAAGTTAGCTATACCCTGACAAAGGTATAACATAATGATAAGTAAAGATATTGTGTCAAAGTTAGACCTGATTGATTCctaatgtgtgtatttgtgcatggGCAAAGCTCTCCCATGTCCAACCATTGTGATGGATATAGGCTGTGAGCAGGGTCTTTTCtaattggacaagtccaggtagtccttTCCTCCCGTTTCAGTCCGTTTTCATCCATTTCAACACGACCCAGATGACTTGAGACAGTAGAACATTTCCACTGTGCTGGTAcaatgtttctctctccctgagcTCCCTCACTGCTCAGTGTTTTCCATGTCTTCAGACttctcctggtctttgtggtccTGCTCTGTGTCCTCCTCCTGGGGCtcgccctcctccttccccccgtTGACCTGGAACTTGTCATGTGTCCACTTGgggctgctgttgttgttggcgTGGTTGTTGGGTAAGCCAACGCTGGCCTTCCGGATAATGAAACGGCCCCTGCTGCCACGCAGGAAGTTCCCCCGTCCTCCACGTCCTCGGTTGTCCACCCACTTCCTCTCGCCC

Function

NR:

description
thyroid hormone receptor-associated protein 3-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU277798 True 2576 lncRNA 0.38 2 29283851 29286468

Neighbor

gene id symbol gene type direction distance location
LOC110517348 LOC106604987 coding downstream 82287 29196146 ~ 29201564 (-)
dnali1 dnali1 coding downstream 244413 29034928 ~ 29039438 (-)
rspo1 LOC106605132 coding downstream 362327 28891420 ~ 28921524 (-)
LOC110517244 LOC106582991 coding downstream 497573 28781383 ~ 28786278 (-)
LOC110517222 NA coding downstream 558557 28719454 ~ 28725294 (-)
LOC110517416 LOC106605123 coding upstream 35563 29322031 ~ 29388582 (-)
stk40 LOC106583156 coding upstream 125720 29412188 ~ 29443132 (-)
oscp1b LOC106583166 coding upstream 160551 29447019 ~ 29456324 (-)
LOC110517486 LOC106583166 coding upstream 169982 29456450 ~ 29458390 (-)
mrps15 LOC106583175 coding upstream 172062 29458530 ~ 29463042 (-)
G243173 NA non-coding downstream 88351 29193301 ~ 29195500 (-)
G243180 NA non-coding downstream 94343 29189223 ~ 29189508 (-)
G243144 NA non-coding downstream 171945 29111700 ~ 29111906 (-)
G243137 NA non-coding downstream 179756 29103850 ~ 29104095 (-)
G243132 NA non-coding downstream 193872 29089482 ~ 29089979 (-)
G243309 NA non-coding upstream 81519 29367987 ~ 29368444 (-)
G243322 NA non-coding upstream 95158 29381626 ~ 29386695 (-)
G243330 NA non-coding upstream 104120 29390588 ~ 29390843 (-)
G243568 NA non-coding upstream 241923 29528391 ~ 29528626 (-)
G243154 NA other downstream 131222 29132316 ~ 29152629 (-)
G242796 NA other downstream 337559 28945741 ~ 28946292 (-)
G242539 LOC106582989 other downstream 553476 28726970 ~ 28730375 (-)
G244338 NA other upstream 802375 30088843 ~ 30129214 (-)
G244379 NA other upstream 887545 30174013 ~ 30177408 (-)
G244381 LOC106583245 other upstream 912764 30199232 ~ 30199770 (-)
G244393 LOC106583245 other upstream 925102 30211570 ~ 30217682 (-)

Expression


Co-expression Network