G242893


Basic Information

Item Value
gene id G242893
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 29287778 ~ 29288682 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU277414
tgacctctggcagtctctatggtagTACCACAGTGTTTAATTCTCgggtcgactcttttctctgtatatatcaatgatttcgctcttgctgctggtgattctctgatccacctctacgccacctctagaatatgtggacaactacaaatacctaggtttctggttagactgtaaactctccttccagactcacattaagcatctccaatccaaaattaaatctagaatcgtattcctatttcgcaacaaagcctccttcactcatgctgccaaacataccctcgtaaaactgactatcctaccgatccttgacttcggcgatgtcatttacaaaatagcctccaacactctactcagcaaattggatgtagtctatcacagtgtaaTCTGTTttctcaccaaagccccatattctacccaccactgtgacctgtatgctctcgttggctggcccacgCTAAATattcattgccaaacccactggatccaggtcatctatgagtctttgctaggtaaaacccAGCCTTATCTCTAtcagtagcacgcgctccagcaggtatatttcactggtcatcccctaagccaacacctcctttggccggctttccttccagttctctgctgccaatgaatggaacaaattgcaaaaatcactgaagctggagacgtaAATCTTCCTCTCTAACTTtatgcatcagctgtcagagaagcttaccgatcactgcacctgtacatagcccatctgtaaatagcacacccaactactgTACCTCaaccccatattgttatttatttatttagatatattttttgctcttttgcacccctatatccctacttgcacatcatcatctgcacatctattactccagtgttaaagctatattgtaattatttcacctcta

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU277414 True 905 lncRNA 0.43 1 29287778 29288682

Neighbor

gene id symbol gene type direction distance location
thrap3a LOC106583094 coding upstream 1301 29256335 ~ 29286477 (+)
map7d1a LOC106583045 coding upstream 103418 29104505 ~ 29184360 (+)
si:ch211-1i11.3 LOC106583027 coding upstream 204486 29048597 ~ 29083292 (+)
LOC110517283 LOC106583031 coding upstream 241932 29039468 ~ 29045846 (+)
LOC110517275 LOC106583018 coding upstream 252854 28995823 ~ 29034924 (+)
LOC110517404 LOC106605124 coding downstream 2238 29290920 ~ 29312030 (+)
LOC110517541 LOC106583205 coding downstream 806494 30095176 ~ 30122574 (+)
LOC110517569 LOC106583231 coding downstream 853841 30142523 ~ 30165671 (+)
LOC110517587 LOC106583242 coding downstream 882077 30170759 ~ 30196394 (+)
LOC110517613 LOC106583245 coding downstream 907913 30196595 ~ 30217693 (+)
G242974 NA non-coding upstream 41415 29246161 ~ 29246363 (+)
G242972 NA non-coding upstream 42385 29245110 ~ 29245393 (+)
G242969 NA non-coding upstream 43935 29243607 ~ 29243843 (+)
G242890 NA non-coding upstream 92518 29194479 ~ 29195260 (+)
G242898 NA non-coding upstream 94559 29192726 ~ 29193219 (+)
G242981 NA non-coding downstream 791 29289473 ~ 29289704 (+)
G243328 NA non-coding downstream 101777 29390459 ~ 29390703 (+)
G243344 NA non-coding downstream 157151 29445833 ~ 29508364 (+)
G243343 NA non-coding downstream 158127 29446809 ~ 29448579 (+)
G243381 LOC106583175 non-coding downstream 172495 29461177 ~ 29462986 (+)
LOC110516993 LOC106605183 other upstream 1538052 27725189 ~ 27749972 (+)
LOC110516984 NA other upstream 1563984 27705985 ~ 27723794 (+)
G241150 LOC106582751 other upstream 1729246 27556172 ~ 27558532 (+)
LOC110516767 LOC106605158 other upstream 2023385 27240708 ~ 27264405 (+)
G243679 LOC107756720 other downstream 379697 29668379 ~ 29690796 (+)
G244292 LOC106583212 other downstream 843717 30132399 ~ 30137564 (+)
G244691 NA other downstream 1343088 30631770 ~ 30632533 (+)
G244851 cep85 other downstream 1576884 30865566 ~ 30874608 (+)
LOC110518244 LOC106583484 other downstream 1629349 30918022 ~ 30924289 (+)

Expression


Co-expression Network