G243344


Basic Information

Item Value
gene id G243344
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 29445833 ~ 29508364 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU277894
attttatttacttttcattCTATGCATTACGACATTTCTATAAAAACTTTTCTTTTTAACAATCGTTAATATTTCACCCAACAAAAAACATAAACATGTACACCATgctaattaataaataaataaataattccaTAAATATACATTTTGGACCATCTGTCATATTGCATCAAAGGATCAGCTGCTTCGATACATTAGTGTTGTGTCACACTTAATCAATTAATCTATTACCATCCCATTTGGTGACGTGAATTATTGCAATATAATATATTTACAAATAATTTGTCTTTCTTTATTTGAAGACACTAAAGGTCACcctaaacatacagtatatatttatccAATACCGAAACAAAAATCAAGGTACAGTAGAAATTTCTCAAAATATGTTTTGGGATCCATGTTTTTGAATTACAATGACAAGTGCACTTGTGTTTCTTTCATTTCCACCAGTCTCTTTAGGTCAGGGGTGTCAAAATAAATCCCTGGAAGGTTGTGTGCTTGCTGTTTTTTGTAATTTATGTCAAATTAAGGCCTAGAGAACTAGATgagaggagcgaaaacccgcagacacaaGGCGCTACAGGAATTGAGTTTGACACCCTCTAGTTTAGGTCCGGTTCATTACTCAGTCGGAGTAAATCAGATTAGGAAAGtcagcaaaaatataaatactgtATTACAGCAGGTATGTGAGAGAAAACAGCGTTATCTTAACATCATGCCGTGATAACAAATTAAAGAGGAACTTACTTTTCCTTCCAGATAAATAGTCAAAAGAAATATTGTTTAAATGTGACATCCATATGGAATGTCAACTTGAAATACATTGATTGAAGCGAGATCAGCAGAGCAGaaatttttatttGTTTATCCGTGATTACAGCCGGGTGGCCGCCCCTTTAACTGTACTGACGTCTTGCACCAGAAAGTTCTGTTGGTCTCCTGAGGCAGACCGAGCATTTCTAGATTTGAAGAGCCGATTCACCAACGCCCcgattctctctcaacctgacacttcccgt

Function

NR:

description
PREDICTED: retrotransposon-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU277894 True 1025 lncRNA 0.35 2 29445833 29508364

Neighbor

gene id symbol gene type direction distance location
LOC110517404 LOC106605124 coding upstream 133803 29290920 ~ 29312030 (+)
thrap3a LOC106583094 coding upstream 159356 29256335 ~ 29286477 (+)
map7d1a LOC106583045 coding upstream 261473 29104505 ~ 29184360 (+)
si:ch211-1i11.3 LOC106583027 coding upstream 362541 29048597 ~ 29083292 (+)
LOC110517283 LOC106583031 coding upstream 399987 29039468 ~ 29045846 (+)
LOC110517541 LOC106583205 coding downstream 586812 30095176 ~ 30122574 (+)
LOC110517569 LOC106583231 coding downstream 634159 30142523 ~ 30165671 (+)
LOC110517587 LOC106583242 coding downstream 662395 30170759 ~ 30196394 (+)
LOC110517613 LOC106583245 coding downstream 688231 30196595 ~ 30217693 (+)
LOC110517635 LOC106583263 coding downstream 709956 30218320 ~ 30220984 (+)
G243328 NA non-coding upstream 55130 29390459 ~ 29390703 (+)
G242981 NA non-coding upstream 156129 29289473 ~ 29289704 (+)
G242893 NA non-coding upstream 157151 29287778 ~ 29288682 (+)
G242974 NA non-coding upstream 199470 29246161 ~ 29246363 (+)
G242972 NA non-coding upstream 200440 29245110 ~ 29245393 (+)
G243419 NA non-coding downstream 25892 29534256 ~ 29541255 (+)
G243715 NA non-coding downstream 187230 29695594 ~ 29696181 (+)
G243731 NA non-coding downstream 199210 29707574 ~ 29707781 (+)
G243767 NA non-coding downstream 226611 29734975 ~ 29735183 (+)
G244083 NA non-coding downstream 458378 29966742 ~ 29966941 (+)
LOC110517275 LOC106583018 other upstream 411119 28995823 ~ 29034924 (+)
LOC110516993 LOC106605183 other upstream 1696107 27725189 ~ 27749972 (+)
LOC110516984 NA other upstream 1722039 27705985 ~ 27723794 (+)
G241150 LOC106582751 other upstream 1887301 27556172 ~ 27558532 (+)
LOC110516767 LOC106605158 other upstream 2181440 27240708 ~ 27264405 (+)
G243679 LOC107756720 other downstream 160015 29668379 ~ 29690796 (+)
G244292 LOC106583212 other downstream 624035 30132399 ~ 30137564 (+)
G244691 NA other downstream 1123406 30631770 ~ 30632533 (+)
G244851 cep85 other downstream 1357202 30865566 ~ 30874608 (+)
LOC110518244 LOC106583484 other downstream 1409667 30918022 ~ 30924289 (+)

Expression


Co-expression Network