G244216


Basic Information

Item Value
gene id G244216
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 30057448 ~ 30058005 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU278810
gggaggggttgtaatttccctctaggcaggtgccgaggagccttgctctgagcacacactgagcaggaggagacataaaatctcacgtctttagccagcgtgggccaccagtatctccctctcagactccgcactgtcctctcgatgccaggatgacccgaggaggggagagtatgagcccACCGGATCAGCTTGTCCCGGACCCCCCTCGGCACGTACTGGGTCCCCACTGGACAGTTAGGGGGGGCCGGCTCTGACCGTGAGGCCTCCTCtatctccgcgtccacctcccataccaccggtgccacgagACATGACGGTGAAATTATGGGAGTTGGCTCAACGGaccgctcctcggtatcatagaggcgggacagcgcgtcggctttGGTGTTTTGGGAGCCTGGCCGGTATGAGAGGGTAAACCGGAACCtggtaaaaaacatggcccatctagcctgacgtggatttagtctcttcgctgcccggatatactcgagattacgatggtcagtccagatgagaaaagggtgtttagccccctcaagccaatgtctc
>TU278811
gggaggggttgtaatttccctctaggcaggtgccgaggagccttgctctgagcacacactgagcaggaggagacataaaatctcacgtctttagccagcgtgggccaccagtatctccctctcagactccgcactgtcctctcgatgccaggatgacccgaggaggggagagtatgagcccACCGGATCAGCTTGTCCCGGACCCCCCTCGGCACGTACTGGGTCCCCACTGGACAGTTAGGGGGGGCCGGCTCTGACCGTGAGGCCTCCTCtatctccgcgtccacctcccataccaccggtgccacgagACATGACGGTGAAATTATGGGAGTTGGCTCAACGGaccgctcctcggtatcatagaggcgggacagcgcgtcggctttGGTGTTTTGGGAGCCTGGCCGGTATGAGAGGGTAAACCGGAACCtggtaaaaaacatggcccatctagcctgacgtggatttagtctcttcgctgcccggatatactcgagattacgatg

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU278810 False 558 lncRNA 0.58 1 30057448 30058005
TU278811 True 509 lncRNA 0.59 1 30057448 30057956

Neighbor

gene id symbol gene type direction distance location
LOC110517404 LOC106605124 coding upstream 745418 29290920 ~ 29312030 (+)
thrap3a LOC106583094 coding upstream 770971 29256335 ~ 29286477 (+)
map7d1a LOC106583045 coding upstream 873088 29104505 ~ 29184360 (+)
si:ch211-1i11.3 LOC106583027 coding upstream 974156 29048597 ~ 29083292 (+)
LOC110517283 LOC106583031 coding upstream 1011602 29039468 ~ 29045846 (+)
LOC110517541 LOC106583205 coding downstream 37171 30095176 ~ 30122574 (+)
LOC110517569 LOC106583231 coding downstream 84518 30142523 ~ 30165671 (+)
LOC110517587 LOC106583242 coding downstream 112754 30170759 ~ 30196394 (+)
LOC110517613 LOC106583245 coding downstream 138590 30196595 ~ 30217693 (+)
LOC110517635 LOC106583263 coding downstream 160315 30218320 ~ 30220984 (+)
G244207 NA non-coding upstream 5618 30051571 ~ 30051830 (+)
G244112 NA non-coding upstream 69586 29987137 ~ 29987862 (+)
G244107 NA non-coding upstream 72229 29984990 ~ 29985219 (+)
G244083 NA non-coding upstream 90507 29966742 ~ 29966941 (+)
G243767 NA non-coding upstream 322265 29734975 ~ 29735183 (+)
G244218 NA non-coding downstream 414 30058419 ~ 30058626 (+)
G244220 NA non-coding downstream 1433 30059438 ~ 30059653 (+)
G244231 NA non-coding downstream 8238 30066243 ~ 30066454 (+)
G244239 NA non-coding downstream 14870 30072875 ~ 30073119 (+)
G244289 NA non-coding downstream 71592 30129597 ~ 30129834 (+)
G243679 LOC107756720 other upstream 366652 29668379 ~ 29690796 (+)
LOC110517275 LOC106583018 other upstream 1022734 28995823 ~ 29034924 (+)
LOC110516993 LOC106605183 other upstream 2307722 27725189 ~ 27749972 (+)
LOC110516984 NA other upstream 2333654 27705985 ~ 27723794 (+)
G241150 LOC106582751 other upstream 2498916 27556172 ~ 27558532 (+)
G244292 LOC106583212 other downstream 74394 30132399 ~ 30137564 (+)
G244691 NA other downstream 573765 30631770 ~ 30632533 (+)
G244851 cep85 other downstream 807561 30865566 ~ 30874608 (+)
LOC110518244 LOC106583484 other downstream 860026 30918022 ~ 30924289 (+)
LOC110518266 LOC106583495 other downstream 886733 30939321 ~ 31127608 (+)

Expression


Co-expression Network