G244338


Basic Information

Item Value
gene id G244338
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 30088843 ~ 30129214 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU278954
catgtagtaaccaaaaaagtgttaaacaaatcaaaatatattttatatttgagattcttcaaatagccaccctttaccttgatgacagctttgcacactcttggcaaacactccatcactctcctttgtggtaaaatatcccttacacagcctggatgtgtgttaggtcataaatcacagacagtgtcaccagcaaagcacccccacaacataacacctcctcctccatgctttactgttggaaatacaaatgcggagatcatccgttcacccacatcGTGTCTCACAacgacacggcggttggaaccaaaaatctccaatttggactccagaccaaaggacacatttccacctgtctaatgtccattgcttgtgtttcttggcccaagcaattctcttcttcttattggtgtcctttagtagtggtttctttgcagcaatttgaccatgaaggcctgattcacacagtctcctctgatcagttgatgttgagatgtgtctgttacttgaactctgtgaagcatttatttgggctgaaatatCTGAGTCtggcaactctaatgaacttatcctctgcaggagggtcttccattcctgtggctgtcctcatgagagccagtttcatcataacgcttgatggtttttgcgactgcacttgaagaaactttcaaagccgttgaaattttccacatttactgaccttcatgtcttaaagtaatgatagaccgccatttccctttgcttatttgagctgttcttgcaataatatggacttggtcttttaccaaataggtctatcttctgtctaacacaactgattggttgaaatgcattaagaaggaaagaaattccccaaatgcacttttaagaaggcacatctattaattgaaatgcatgaggtgactacctcatgaagctggctgagagaatgccaagagtgtgcaaagctgtcatatattttgatatgtttaacacatgtttggttactacatcattccatatgtgttattgcatagtttttatgtcttcactattattctacaatgtagaaaatagtacaaataaagaaaaacccttgaatgagtaggggttctaaaacgtttgaccggtaaTGTAGAGGCACAAGTTTATTGGGAATATGGCACCCCTGATGTATCTACTGTACAACCAACATGCTTCAAAGATCATAGAAGTGTCAAcatcggccctgtattaaagaccAACATTGGCAAAAGAAAAAGAGAACAAATTTGTaaatactatatacagtagtatATGCTGTACATGTATACAGTGGTATATGTGGAATGAGCACTAACACTGTTGTCTTTGTGTTCAGAAATAAAGTAACAATCTTGTAGCATCAAATAGTATTAGCTTATTATGCGTTTCGATAAAAGTACGCTACAGTATATCTTGCCAATAGAAACATTTGGTATTATGGATGTGCAATAAACATTTAGAGTCTTCCAATGACAAATACTAGaacatacagtgctgtgaaatagtatttgccccctttctgatttgatctgtttttgcatatttttgataccgaatgttatcagatctttaACCAAAACCCAGTGATGGATAA

Function

NR:

description
Transposable element Tc1 transposase

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU278954 True 1597 TUCP 0.38 2 30088843 30129214

Neighbor

gene id symbol gene type direction distance location
LOC110517528 LOC106583195 coding downstream 187682 29779075 ~ 29901161 (-)
LOC110517512 LOC106605177 coding downstream 591963 29495265 ~ 29496880 (-)
csf3r csf3r coding downstream 601365 29476256 ~ 29487478 (-)
mrps15 LOC106583175 coding downstream 625801 29458530 ~ 29463042 (-)
LOC110517486 LOC106583166 coding downstream 630453 29456450 ~ 29458390 (-)
LOC110517552 LOC106583212 coding upstream 39 30129253 ~ 30138703 (-)
LOC110517624 LOC106583256 coding upstream 94047 30223261 ~ 30249900 (-)
smpdl3b smpdl3b coding upstream 169543 30298757 ~ 30304553 (-)
LOC110517657 themis2 coding upstream 194543 30323757 ~ 30336172 (-)
LOC110517711 LOC106583306 coding upstream 214746 30343960 ~ 30361770 (-)
G244251 NA non-coding downstream 9843 30078700 ~ 30079000 (-)
G244157 NA non-coding downstream 73416 30015217 ~ 30015427 (-)
G244156 NA non-coding downstream 73753 30014878 ~ 30015090 (-)
G244151 NA non-coding downstream 76160 30012466 ~ 30012683 (-)
G244091 NA non-coding downstream 116764 29971752 ~ 29972079 (-)
G244358 NA non-coding upstream 377 30129591 ~ 30129869 (-)
G244385 NA non-coding upstream 71139 30200353 ~ 30200561 (-)
G244389 LOC106583245 non-coding upstream 74155 30203369 ~ 30204352 (-)
G244391 NA non-coding upstream 79411 30208625 ~ 30208903 (-)
G244392 LOC106583245 non-coding upstream 80082 30209296 ~ 30209919 (-)
G243154 NA other downstream 936214 29132316 ~ 29152629 (-)
G242796 NA other downstream 1142551 28945741 ~ 28946292 (-)
LOC110517244 LOC106582991 other downstream 1302565 28781383 ~ 28786278 (-)
G242539 LOC106582989 other downstream 1358468 28726970 ~ 28730375 (-)
G244379 NA other upstream 44799 30174013 ~ 30177408 (-)
G244381 LOC106583245 other upstream 70018 30199232 ~ 30199770 (-)
G244393 LOC106583245 other upstream 82356 30211570 ~ 30217682 (-)
G245366 LOC106605077 other upstream 815739 30944953 ~ 30945843 (-)
LOC110518371 LOC106583543 other upstream 1433331 31562384 ~ 31631107 (-)

Expression


Co-expression Network