G244292 (LOC106583212)


Basic Information

Item Value
gene id G244292
gene name LOC106583212
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 30132399 ~ 30137564 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU278893
AACAAATACTTAACTACACATGTATTTTAACCCAGGTCTGTTTGGctatgtttacacaggcagcccaattatgATCTTTgtttcactaattggtattttgaccaatcagatcagctctgaaaaagatctcatgTGATTgctcaaaataccaattagtgtaaaaaatatcagaattgggctggctGTGTAGACAGTCTTACAGACCTCAAAAGCAGTCCTTTTTTGCGTAGATCCAGCTACATGCCTCAACTCCAAATTAATGGAAAAGATAAGCACTGCAAATCTGAAAATTACATGGTGCTTTCCATGGACCAATTTTGAGGTCTGAAAACAAGTGTCAAACAGATTTTTAAGTTTAATGGCCTTTTGACACAGCTGGGAGCAGGTGAAGAGAAATGGCTCTACCTGGTGGCTGGAGACAGAGCAGAAATGGGTCTGAAGCCAAATGCTGAGTTCAATGAGACCTGGCTGCAAGACAAGCTGCTTTGGCATGTGTCGCCTGTTGATGACATCCTCTCAGACCCTTTGCTTCGGTTGGAATGGCTCAAGCTGCTTGAGCTGTCCTGGTCCTTTCCATCGTTCGACTGTCTGTTTTCCACCTCTGACTCGCCCAGGTCCTCGAAGCTGCCCACCTGAAGTAAACTTCCAGGCCTGGCTACAGTCTCAGAGATCAGCTGATCAAAATAaaacaaagctgtcatcaagttatTATTATGACTAAATTATGAAACACATACTAACACATAATCATACAGgcgctcacaaacacacacacacacacacacacacacactcagacacacgtTACTTTACATTAGTTCATCGTATCCGATGATTACCTCCACTTCTGAGTTAACGCTGAATTATTTGGGACTGTAGAGTCCAATCCGAGATCCACAAACTTTATTGCAGGTGAGGCATATGGAGTCTGTGTTGGTGGGGGCAGGCGTGGTTGTATGTCACCTGAACTGTTtgtgctcctctcctcccacctctgtaCCTCGCTCTGGCAGAGCTGCCACCAGTTGGAACGGTCAACAGCAGAATCCTCCAGGTCTGTGGGTTTGATGTTGCACTTCTTCAGCAATGTTTTCAGCTGGTCCTTGTAGTGCTTCATCTGCCCCCTGCAGACCGCCGGCCAAGATGTAGCTGGCCCCCTCTGCAGACTGCCGGCCAATATGTAGCTGGCCCCCTCAGCAGACCGCTGGCCAAGATGTAGCTGGCCCCCTCTGCAGACCGCCGGCCAAGATATAGCTGGCCCCCTCTGCAGACCACTGGCCAAGATGTAGCTGGCCATACAGGATCTTCCACTGCAAGAGCTCCCGAGACAGtgcagttggtgttgggtgaccatggcctccatactcttgcaGTTGGTCTTACAGTTGCAAGTATTTCTGTATGGGGCACACGGTCACACCAGGTGATTCCCAGGATGCGCTGCAGGCATCTTCTGTGGAATCGCTCAAACTGCTTGTTGTGGCAACTGTAAGTGACCCAGGATTCACAGCTGTATAGAAGTGTGGTGATGCAGACGGCTTGATAGATTGCGActttggtgtggaggtggagatccCTGTTTTGGAAGACCCTGCGTCTGAGATTCCCGAAGGCAGCTGATGCTTGCTTGATCCTATTTTTAATTTCGAGGTCGATGCTGCAGTCCTCCGAAAGGATGCTGCCCAGGTATTTGAAGGATGTGACTATTGCCAGTGATTTGTGTTCAATGGTGAAGACAGGCATGGTGGGTGGAGGGCTGGATCTCCATTTGGCAGACCCCCTCTGTCTTGGTGGTGTTGCTAGACAGTCCCATCCTGCTATATACCCTCACGGACCGAAGTTCTTCCGGAGTGTGGGCCACAAGAGCACAGTCATTAGAATACTGCAGCTCAAGAACCCGTTCCGTCAAAACCCTGGTGGTTGCTTggagcctcctgatgttgaataGTGTTCCATCTAGCCTGAAGTCCACCGCAACCCCGCTACTGTCCTCAAGCTCCTTGTGGAGAAGCAGGGTGACACATAGGAGAAAGATGTTAAAGAGTACAGGTGCCAGCACACACCCCTGCCTCACACCGACGCTTACTCCAAAGGCCACTGACTCCTGCCCTCctataaccacccgagccatcaTCCTATCATGGAACTGGCAAAGGATGTTGACAAATTTGTCTGGACAGCCTGCAATATTTGAGTAGAATGCCCCATAGTAGTTCCCTGCTCACTGTGTCGAAGGCCTTGGAGAGGTCGACAAAGGCCATGAAAAGGTCCGGATGTTGTTCACAGCACTTCTCCTGGAGTTGCTGTGCAGTGAATATCATGTCGACCGTACTCCTGTTCTTTCTGAAGGCGCATCAGGACCTTGCTGGCAACAGCCAGAATGGGTATCCCCTGGCTGTTTGTCCCAGATGGACTTGGCACCCTTGTTCGGTGGCAATGTTTGCATCCCACCACTGTTGTGGGACGATCTCCCCGTCCCAAACCTCAGTGACGTACTGGTAGAGCGTTCTGGTGCACAAGTAACCTCCCTTCTTCAGTAGCTCTGCCGGGATGCTCTCAGTGGCAGGAGCCTTGTTGTTCTTGAAGGAACGGATAGCTGATAATACCTCTTGGACGGTTGGTGAATGGTGGACGTCTTGAATGGGTGGACGGACAGGCAGTTCTTCCAGGATGGAGTGGTCTGTAGGAGAACGCTGATTGAGTAGTGCTTCAAAGTGGTCAGCACACCTTATCAGGATCTGGTTTTGGTCCTTCAAGAGAGTCAGACCATCAGTTGTTATCAGGGGGGTGATGGAGCAACTTCTAGGGACATAGATAGCTTTAGCTGAGTTGTAGAAATTGTGCATGTCGTTTTTTCTGTGTAAATTTGGATTTCCTGTGCCTTGTTCGTCTACCATTCGTTCTGCAGAGCATACAAGGTTGTTTGCACTTACTTCCTTGAGTGATGCACGCCATTGCCGGCGGACGGTAGCAGATGTGGGGCTGTTGAGAGTAGCTCTGTGTGCTTTGTGCATAATGTCCAGTAAGGTTGTTGTGGTGTCAGTTCTCATCGAACCAGTCCTGATGTTTCCTACCTCTGTAGCCAATGGAGTGGGCCGCTGACTGATAGAGTACTGAGCTAATAGATGACCACTTCTGGTCCATGGTGTCCTCTGCGCTCAGAAGAGGCTCAGTCTCCCTCAGCCATTCATCGATAGAGCGACAGAACTCGCCCCTTACAGCAGTTTTCTCAAGctgggtgcacacacacacacacacacctgataatGTAGGTCCTGCTGTATCACCTGCAGTTCCACAAACTTCCTCTCCCATGTTGCCCTCTCAAAGGTGATCTGGGTTTTTAGGGCCTGAATCTCCCTCTCAGCTTTGGACAATCTCCTCTGCATGGCACTGCTATCATGACTTCCTGGTATTTCCTGATTCGCTGAGCCTGGAAATCAACAATCCAATATATACAGAGACCAgaattctattccattctattctattatattccaaactcagcaaaaaaagaaacgtccctttttcaggaccctgtctttcaaagacaattcgtaaaaatccaaataacttcacagatcttcattgtaaagggtttaaacacggtttcccatgcttgttcaatgaaccacaaacaattaatgaacatgcacctgtggaacggtcgttaagacactaacagcttacagacggtaggcaattaaggtcacagttatgaaaacttaggacactaaagaggcctttctactgactctgaaaaacaccaaaagaaagatgcccagggtccgtgttcatctgcgtgaacgtgccataggcatgctgcaaggaggcaagagaactgcagatgtggccagggcaatgaattgtaatgttcgtactgtgagacgcctaagacagttctacagggagacaggatgcacaactgatcgtcctcgcagtggcagaccacatgtagcacacctgcacaggattggtacaactgcccgagttacaccaggaatgcacaatccctccatcagtgctcagactgtccgcaataggctgagagaggctggacagagggcttgtaggcctgttgtaaggcaggtcctcaccagacatcaccagtaACAAtgcgcctatgggcacaaacccaccgtcgctggaccagacaagactggcaaaaagtgttcttcactgacgagtcacggttttgtctcaccaggggtgatggttggatttgcatttatcgtcgaaggaatgagcgttacaccgaggcctgtactctggagcgggatcgatgtggaggtggagggtctattatggtctggggcgatgtgtcacagcatcatcggactgagcttgttgtcattgctggCAATCTCAACAATGtttgttacagggaagacatcctcgtCCCTCATggggtacccttcctgcaggctcatcctgatatgaccctccagcatgacactgccaccagccatactgctcgttctgtgcgtgatttcctgcaaaacaggaatgtcagtgttctgccatggccagcgaagagcccggatctcaatcccattgagcacgtctgggacctgttggatcggagggtgaggactagggccattcGCCCAGAATTGTCagagaacttgcaggtgccttggtggaagagtggggtaacatctcacagcaagaactggcaaatctggtggagtccacgaggaggagatgcactgcagtacttaattaatgcagctggtggccaca

Function

NR:

description
PREDICTED: hemicentin-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU278893 True 4743 TUCP 0.49 2 30132399 30137564

Neighbor

gene id symbol gene type direction distance location
LOC110517541 LOC106583205 coding upstream 9825 30095176 ~ 30122574 (+)
LOC110517404 LOC106605124 coding upstream 820369 29290920 ~ 29312030 (+)
thrap3a LOC106583094 coding upstream 845922 29256335 ~ 29286477 (+)
map7d1a LOC106583045 coding upstream 948039 29104505 ~ 29184360 (+)
si:ch211-1i11.3 LOC106583027 coding upstream 1049107 29048597 ~ 29083292 (+)
LOC110517569 LOC106583231 coding downstream 4959 30142523 ~ 30165671 (+)
LOC110517587 LOC106583242 coding downstream 33195 30170759 ~ 30196394 (+)
LOC110517613 LOC106583245 coding downstream 59031 30196595 ~ 30217693 (+)
LOC110517635 LOC106583263 coding downstream 80756 30218320 ~ 30220984 (+)
LOC110504010 LOC106583270 coding downstream 123539 30261103 ~ 30281572 (+)
G244291 NA non-coding upstream 392 30131799 ~ 30132007 (+)
G244289 NA non-coding upstream 2565 30129597 ~ 30129834 (+)
G244239 NA non-coding upstream 59280 30072875 ~ 30073119 (+)
G244231 NA non-coding upstream 65945 30066243 ~ 30066454 (+)
G244220 NA non-coding upstream 72746 30059438 ~ 30059653 (+)
G244293 NA non-coding downstream 126 30137690 ~ 30138188 (+)
G244294 NA non-coding downstream 770 30138334 ~ 30138653 (+)
G244443 NA non-coding downstream 144969 30282533 ~ 30282958 (+)
G244445 NA non-coding downstream 146265 30283829 ~ 30284178 (+)
G243679 LOC107756720 other upstream 441603 29668379 ~ 29690796 (+)
LOC110517275 LOC106583018 other upstream 1097685 28995823 ~ 29034924 (+)
LOC110516993 LOC106605183 other upstream 2382673 27725189 ~ 27749972 (+)
LOC110516984 NA other upstream 2408605 27705985 ~ 27723794 (+)
G241150 LOC106582751 other upstream 2573867 27556172 ~ 27558532 (+)
G244691 NA other downstream 494206 30631770 ~ 30632533 (+)
G244851 cep85 other downstream 728002 30865566 ~ 30874608 (+)
LOC110518244 LOC106583484 other downstream 780467 30918022 ~ 30924289 (+)
LOC110518266 LOC106583495 other downstream 807174 30939321 ~ 31127608 (+)
G244956 NA other downstream 898953 31036517 ~ 31037252 (+)

Expression


Co-expression Network