G244447


Basic Information

Item Value
gene id G244447
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 30303389 ~ 30306845 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU279086
agggctaCATAAAATAAATGTTAGTTTGTTGTACCCTGTCCAGACGATGAAATCCGGATCTGGCAGAATGTATTTCATTGCATACACTGTGGAGTTAATAAGGTCCCATGGCGCATCGCAGAGGTAGTCTCCAAATTGTCCCGCACTGGGCACAGGACGTTTTCCACTAGAAGCACACACAAGCTCAGGATTTTCGGTGTGTTTATAGGTTGGGTCCCAGTGAATATCCGTGATGTGCCAAAAGTTTCCTGGAAAAgaaggtggcgtggtGGTCCTTCGTTGGAAAATTCTGTCACCAAAcgttgtcatcaaagtctgccattctctggatttatggtgctttcaagacatctGGGAACTCTGGGGGGGAAAAACAAGGTTGAATTATGATGTCAGTTATCTTCAGGTCGGcgctctagaaagatgcctgagttcccgacttggaattccgagttggatgaccgttcagttgtcttgaactcactgaagtctgagatttcacagttccgagtttccagtggttttgaatgcggcagaagtcatgctggattgacagcatggcatATGTTGAATATTTgcccttttaagcttggaaaagaaacCCTTAAACCcaacttggaccacacacccactccactgaatagcaggctagtgattgctttgcaatgcttgcagttagccactgattcctttcaAACCACTCaatgttgaatttgcgatttccaacttgatGTGTCATTTTTATATCCAATGGCCGATGGCCGATTATATCCAATGGCCGTTTTATCTaaaatttctcttcatatgacaaggattggaaaggatttgccagtagattgtctacttcatgatgatgactgctagcttgctagctaagattttgaaagcaTGTTGacaatcagtccaatcaaagctacggtagatataatgcgatttgacataattttatcttTGGCCTATGACATTGAGCCTTCTCGGataggcacttctaatgtaacccTATGGCAGCACTCAAGGGGCATGACTTTTCAAGCTCTCCCCTAGAGATGTCCAACCCCTACACGCTGTGTATTCAGCGGactgcccctccaccacagaaagcactgagctaggctgaaacacctgcattttggagctgccttactcaagaaagcaaaaaagagaccatgtttgtatgcagctttattaactcaatggttattatttatattttacattgtttgcaaactgatatgtgacatgaattaatgccaaaataacatgcgaaacaggcacaaaaaaaacaacatatatactgtatatatatttttgtagctAAACCGGTGGGGTTCAAAACAGGTTGAGCTCtgcccacctgccctgaatgacgggttgcctttgttaatgcccatgattttggaatgagatgttttacgagctggtgtccacatactaatttttatttatttatttttattcaaaATACAGATCAACAATTTACATTCTTATATCATACAAAACAGAACGCAGGTATTAACGAGAAAATT
>TU279085
TGGCAGAATGTATTTCATTGCATACACTGTGGAGTTAATAAGGTCCCATGGCGCATCGCAGAGGTAGTCTCCAAATTGTCCCGCACTGGGCACAGGACGTTTTCCACTAGAAGCACACACAAGCTCAGGATTTTCGGTGTGTTTATAGGTTGGGTCCCAGTGAATATCCGTGATGTGCCAAAAGTTTCCTGGAAAAgaaggtggcgtggtGGTCCTTCGTTGGAAAATTCTGTCACCAAAcgttgtcatcaaagtctgccattctctggatttatggtgctttcaagacatctGGGAACTCTGGGGGGGAAAAACAAGGTTGAATTATGATGTCAGTTATCTTCAGGTCGGcgctctagaaagatgcctgagttcccgacttggaattccgagttggatgaccgttcagttgtcttgaactcactgaagtctgagatttcacagttccgagtttccagtggttttgaatgcggcagaagtcatgctggattgacagcatggcatATGTTGAATATTTgcccttttaagcttggaaaagaaacCCTTAAACCcaacttggaccacacacccactccactgaatagcaggctagtgattgctttgcaatgcttgcagttagccactgattcctttcaAACCACTCaatgttgaatttgcgatttccaacttgatGTGTCATTTTTATATCCAATGGCCGATGGCCGATTATATCCAATGGCCGTTTTATCTaaaatttctcttcatatgacaaggattggaaaggatttgccagtagattgtctacttcatgatgatgactgctagcttgctagctaagattttgaaagcaTGTTGacaatcagtccaatcaaagctacggtagatataatgcgatttgacataattttatcttTGGCCTATGACATTGAGCCTTCTCGGataggcacttctaatgtaacccTATGGCAGCACTCAAGGGGCATGACTTTTCAAGCTCTCCCCTAGAGATGTCCAACCCCTACACGCTGTGTATTCAGCGGactgcccctccaccacagaaagcactgagctaggctgaaacacctgcattttggagctgccttactcaagaaagcaaaaaagagaccatgtttgtatgcagctttattaactcaatggttattatttatattttacattgtttgcaaactgatatgtgacatgaattaatgccaaaataacatgcgaaacaggcacaaaaaaaacaacatatatactgtatatatatttttgtagctAAACCGGTGGGGTTCAAAACAGGTTGAGCTCtgcccacctgccctgaatgacgggttgcctttgttaatgcccatgattttggaatgagatgttttacgagctggtgtccacatactaatttttatttatttatttttattcaaaATACAGATCAACAATTTACATTCTTATATCATACAAAACAGAACGCAGGTATTAACGAGAAAATTctggaacaaaaaaaaacaaaacaaaaacaattattgTGCAATTGTAATCACTCTGAAAAAATATTATTGTAATGATTTAGGAAaattttattatt

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU279086 False 1526 lncRNA 0.41 2 30303389 30306750
TU279085 True 1561 lncRNA 0.40 2 30303449 30306845
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Neighbor

gene id symbol gene type direction distance location
LOC110517644 NA coding upstream 10168 30289328 ~ 30293221 (+)
LOC110504010 LOC106583270 coding upstream 21817 30261103 ~ 30281572 (+)
LOC110517635 LOC106583263 coding upstream 82405 30218320 ~ 30220984 (+)
LOC110517613 LOC106583245 coding upstream 85696 30196595 ~ 30217693 (+)
LOC110517587 LOC106583242 coding upstream 106995 30170759 ~ 30196394 (+)
rpa2 rpa2 coding downstream 3340 30310185 ~ 30323571 (+)
LOC110517685 LOC106605108 coding downstream 29788 30336633 ~ 30342478 (+)
LOC118964376 NA coding downstream 30878 30337723 ~ 30337885 (+)
LOC110517739 med18 coding downstream 56316 30363161 ~ 30367437 (+)
LOC110504017 LOC106583301 coding downstream 68730 30375575 ~ 30412306 (+)
G244446 NA non-coding upstream 15603 30286007 ~ 30287786 (+)
G244445 NA non-coding upstream 19211 30283829 ~ 30284178 (+)
G244443 NA non-coding upstream 20431 30282533 ~ 30282958 (+)
G244294 NA non-coding upstream 164736 30138334 ~ 30138653 (+)
G244433 LOC106583306 non-coding downstream 51974 30358819 ~ 30359857 (+)
G244466 NA non-coding downstream 68046 30374891 ~ 30375142 (+)
G244481 NA non-coding downstream 88808 30395653 ~ 30395929 (+)
G244482 NA non-coding downstream 90288 30397133 ~ 30397350 (+)
G244487 NA non-coding downstream 100180 30407025 ~ 30407245 (+)
G244292 LOC106583212 other upstream 165825 30132399 ~ 30137564 (+)
G243679 LOC107756720 other upstream 612593 29668379 ~ 29690796 (+)
LOC110517275 LOC106583018 other upstream 1268675 28995823 ~ 29034924 (+)
LOC110516993 LOC106605183 other upstream 2553663 27725189 ~ 27749972 (+)
LOC110516984 NA other upstream 2579595 27705985 ~ 27723794 (+)
G244691 NA other downstream 324925 30631770 ~ 30632533 (+)
G244851 cep85 other downstream 558721 30865566 ~ 30874608 (+)
LOC110518244 LOC106583484 other downstream 611186 30918022 ~ 30924289 (+)
LOC110518266 LOC106583495 other downstream 637893 30939321 ~ 31127608 (+)
G244956 NA other downstream 729672 31036517 ~ 31037252 (+)

Expression

G244447 Expression in all Baseline Samples

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G244447 Expression in each Bioproject

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G244447 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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Co-expression Network