G245127 (atp1a3)


Basic Information

Item Value
gene id G245127
gene name atp1a3
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 30518427 ~ 30576217 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU279822
cagacattgTTAGGTTGTATTAAATGGTCTAGATGTTTTATTGGTGTTGGTTTCGTTTTCTTTCACACACATGTTCTacgactgttttttttttttttttgtcatctgTAGTCTCAACCCCCTACAGCCCTCTGAGTAAGACCCAGCCTGAAATGGCTGTTCCTCTGCTGGTCTCCAATACAGACATTCACACAGAACTTAATACCTGGACTGGGTCTCCTAGATTGGACCGGACTCCAGGAACATGGAAGTGGTAGCAGGAATATGGACGCCATAGTTTCTGTCTCACATGTTTTAATAATAAAACACAACCTTGtcgctttttttgttgttgttacatttTTGCAGCGGCTTTCTGAAAACCTGGCGAAAAAAAGATTGGAAACCATACAGAAAAAGGAAACAGAGTGATCTTTCCTCTTTTTCCATAGCACGCTCAACAATGCCGCCGATGTTCTTTTTCACTGAATGTGTATcttgagatgttttattttcaacaTATTTTTATTTCTTTAAATCGGTATAGAATTATATAGTTTTCCTAGAACACACAGAAAGATTGAGTTGTATTTTCCAACTGGGGGTGTACTGTAGTATTTAACAAGGACAATGGTTCACACAGTGCACACATACAGACAAACAGGGagtagagtggagaggagggtgtgagagacagaaagggaaggGGGGACTGGGGACGCCATGGCGGGGTGTGCTTTGTTATGCCTAAATGAGGGAAAGCAGCTCTCACACACCCCCCCTCCcattatataaataaaaaaacaagtaaaaccaatgaacccccaccccatagtataaaaaaaacaacaacaacactgttgaAGAAAAAGGAAACGGTCGGAGTGAGAAAGACATCCGCTCTTCCTCCTGCAGACAGGAGAGGGCGAGAGGGGACGGCTCGTATTGGTGTCAGCTGTGGGATCTCGCTTGTGATCCGTAGATCTGTGTGTGACCGGAGGACGAGCAAAGGGTCgcaggagaaagaagagagggaggaacagaggtggaaagatgaacggagcaaagtacagagagctccttgatgaaaacctactccagagtgctcaggacctaaggctggggcgaaggttcaccttccaacaggacaacgaccctaagcacacagccaagacaacgctggtgttgcttcgggacaagtctctgaatgtccttgagtggcccagccagagcccagacttgaacccaatcaaacatctctggagagctgaaaataaatgtacagtgacgctccccatataacctgacagagcttgagaggatctgcagagaagaatgggagagacTCACCAAATActgtacaggtgtgccaagcttgtagcatcatacccaagaagactcgaagctgcaatcactgacaaaggtgcttcaacaaagtactgaggaaagggtctgaatacttatgtaaatgtgatatttcagttg
>TU279815
cagacattgTTAGGTTGTATTAAATGGTCTAGATGTTTTATTGGTGTTGGTTTCGTTTTCTTTCACACACATGTTCTacgactgttttttttttttttttgtcatctgTAGTCTCAACCCCCTACAGCCCTCTGAGTAAGACCCAGCCTGAAATGGCTGTTCCTCTGCTGGTCTCCAATACAGACATTCACACAGAACTTAATACCTGGACTGGGTCTCCTAGATTGGACCGGACTCCAGGAACATGGAAGTGGTAGCAGGAATATGGACGCCATAGTTTCTGTCTCACATGTTTTAATAATAAAACACAACCTTGtcgctttttttgttgttgttacatttTTGCAGCGGCTTTCTGAAAACCTGGCGAAAAAAAGATTGGAAACCATACAGAAAAAGGAAACAGAGTGATCTTTCCTCTTTTTCCATAGCACGCTCAACAATGCCGCCGATGTTCTTTTTCACTGAATGTGTATcttgagatgttttattttcaacaTATTTTTATTTCTTTAAATCGGTATAGAATTATATAGTTTTCCTAGAACACACAGAAAGATTGAGTTGTATTTTCCAACTGGGGGTGTACTGTAGTATTTAACAAGGACAATGGTTCACACAGTGCACACATACAGACAAACAGGGagtagagtggagaggagggtgtgagagacagaaagggaaggGtgtgctggtgtgtgtgggtgtgtgtgtgtgtgtgtgtcttatgtTTCTCACCTTGGGTTGACCTGGCTGACGGGGATATTGAGGCGAGAGGCGATGTCCTCCACTGTCTCGTTGCCCTCGGAGATGATGCCCACGCCCTTAGCGATGGCCTTGGCAGTGATTGGATGATCACCTGTCACCATGATGACTTTGATGCCAGCCGAACGACATTTGCCCACAGCGTCGGGCACAGCGGCACGGGGAGGGTCAATCATGGACATGAGGCCCACGAAGCACAGGCTCTCTGTGGTGAAGTTAACGTCGTCACAGTCGAAGGCAAAGCCCTTGGGGTACTGGTCCTCTGGCATTAGCAGGTGGCAGAAACCTGGGGAGTAACAGGAGGGGTTCGCTTGATTTACTTGTTCTACTCATCCTCTACTAAATCAGTCAATCCTTCAGCTCACATTTTTTATTCACTATTGGATAAGGTACATTTGACTCATTCTCC
>TU279816
cagacattgTTAGGTTGTATTAAATGGTCTAGATGTTTTATTGGTGTTGGTTTCGTTTTCTTTCACACACATGTTCTacgactgttttttttttttttttgtcatctgTAGTCTCAACCCCCTACAGCCCTCTGAGTAAGACCCAGCCTGAAATGGCTGTTCCTCTGCTGGTCTCCAATACAGACATTCACACAGAACTTAATACCTGGACTGGGTCTCCTAGATTGGACCGGACTCCAGGAACATGGAAGTGGTAGCAGGAATATGGACGCCATAGTTTCTGTCTCACATGTTTTAATAATAAAACACAACCTTGtcgctttttttgttgttgttacatttTTGCAGCGGCTTTCTGAAAACCTGGCGAAAAAAAGATTGGAAACCATACAGAAAAAGGAAACAGAGTGATCTTTCCTCTTTTTCCATAGCACGCTCAACAATGCCGCCGATGTTCTTTTTCACTGAATGTGTATcttgagatgttttattttcaacaTATTTTTATTTCTTTAAATCGGTATAGAATTATATAGTTTTCCTAGAACACACAGAAAGATTGAGTTGTATTTTCCAACTGGGGGTGTACTGTAGTATTTAACAAGGACAATGGTTCACACAGTGCACACATACAGACAAACAGGGagtagagtggagaggagggtgtgagagacagaaagggaaggGGGGACTGGGGACGCCATGGCGGGGTGTGCTTTGTTATGCCTAAATGAGGGAAAGCAGCTCTCACACACCCCCCCTCCcattatataaataaaaaaacaagtaaaaccaatgaacccccaccccatagtataaaaaaaacaacaacaacactgttgaAGAAAAAGGAAACGGTCGGAGTGAGAAAGACATCCGCTCTTCCTCCTGCAGACAGGAGAGGGCGAGAGGGGACGGCTCGTATTGGTGTCAGCTGTGGGATCTCGCTTGTGATCCGTAGATCTGTGTGTGACCGGAGGACGAGCAAAGGGTCgcaggagaaagaagagagggaggaacagaggtgTAGAGATAGCGGGGGAAAGaaggggaagggaggaaggagtgGTATGGCCCTTTTTTTTTTGCCGAGCGTAGAAACTCCCTTTAGATCATAGCTCGTTCAAATCTACATACACAATATGCAGCTGCCGTTTGGTAGATATATTGGTTTATGTACACAGCAGTGAGAGAACACATGCAAAGAGTATCATAGGAGATGGAGATGGGGGGGGGTTGATGTAGGAAGTCGTAAAGGTGCTTTGCTGTTTTTAATCTTTGGGGCAGTTGTGATGAAAATTGCTTCGAAGCGGTTGTTGTCTTTTACGGGGTGGGGCATCTGAAGACGTGTCTTGCCAGGGATGGAATGAAAGGGGGgagaaacaaatggaaaatgtagGGGTATGAGTAAAGACGGTATCCATCACTCAATAGTATGTCTCCCTTTCCACCCAACCTgtaggaggagagggtaggggaagagaaaagagaggcaTTAGAGAGTTTTCTTGTTTTAGTGTCAATTAAAGATTTGTGTGTGAAGTTACAAATGCAAATCTCATGACAGGATTCGGGCCTAAATGTTAtacatagagaaagagacagccatTTACCTCCTGGGTTCCTACGGATGAGCAGTTTTCGGATCTCATCATACACAAAAATGAGGACACTGTAGGGGACCGCACAGAACCACCAGCTGGgcTTAGGGGGAACATCCTGAGTGCCACGTCCATGCCTGGGGTGTAGGATAGGAAGGCAGCCAGAGCTGTCTCCTCAAACAGGCCAAAGATCAGGATCTTGTTCCTAAGAGGAGAGTAGTGCAGAGGAGAGACATGAGAATGAGAATAAATataagagggtgagagagactaATATACATAGAGACCAAGCATACTGTATATTAACaaatgtagagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacag
>TU279820
cagacattgTTAGGTTGTATTAAATGGTCTAGATGTTTTATTGGTGTTGGTTTCGTTTTCTTTCACACACATGTTCTacgactgttttttttttttttttgtcatctgTAGTCTCAACCCCCTACAGCCCTCTGAGTAAGACCCAGCCTGAAATGGCTGTTCCTCTGCTGGTCTCCAATACAGACATTCACACAGAACTTAATACCTGGACTGGGTCTCCTAGATTGGACCGGACTCCAGGAACATGGAAGTGGTAGCAGGAATATGGACGCCATAGTTTCTGTCTCACATGTTTTAATAATAAAACACAACCTTGtcgctttttttgttgttgttacatttTTGCAGCGGCTTTCTGAAAACCTGGCGAAAAAAAGATTGGAAACCATACAGAAAAAGGAAACAGAGTGATCTTTCCTCTTTTTCCATAGCACGCTCAACAATGCCGCCGATGTTCTTTTTCACTGAATGTGTATcttgagatgttttattttcaacaTATTTTTATTTCTTTAAATCGGTATAGAATTATATAGTTTTCCTAGAACACACAGAAAGATTGAGTTGTATTTTCCAACTGGGGGTGTACTGTAGTATTTAACAAGGACAATGGTTCACACAGTGCACACATACAGACAAACAGGGagtagagtggagaggagggtgtgagagacagaaagggaaggGGGGACTGGGGACGCCATGGCGGGGTGTGCTTTGTTATGCCTAAATGAGGGAAAGCAGCTCTCACACACCCCCCCTCCcattatataaataaaaaaacaagtaaaaccaatgaacccccaccccatagtataaaaaaaacaacaacaacactgttgaAGAAAAAGGAAACGGTCGGAGTGAGAAAGACATCCGCTCTTCCTCCTGCAGACAGGAGAGGGCGAGAGGGGACGGCTCGTATTGGTGTCAGCTGTGGGATCTCGCTTGTGATCCGTAGATCTGTGTGTGACCGGAGGACGAGCAAAGGGTCgcaggagaaagaagagagggaggaacagaggtgTAGAGATAGCGGGGGAAAGaaggggaagggaggaaggagtgGTATGGCCCTTTTTTTTTTGCCGAGCGTAGAAACTCCCTTTAGATCATAGCTCGTTCAAATCTACATACACAATATGCAGCTGCCGTTTGGTAGATATATTGGTTTATGTACACAGCAGTGAGAGAACACATGCAAAGAGTATCATAGGAGATGGAGATGGGGGGGGGTTGATGTAGGAAGTCGTAAAGGTGCTTTGCTGTTTTTAATCTTTGGGGCAGTTGTGATGAAAATTGCTTCGAAGCGGTTGTTGTCTTTTACGGGGTGGGGCATCTGAAGACGTGTCTTGCCAGGGATGGAATGAAAGGGGGgagaaacaaatggaaaatgtagGGGTATGAGTAAAGACGGTATCCATCACTCAATAGTATGTCTCCCTTTCCACCCAACCTgtaggaggagagggtaggggaagagaaaagagaggcaTTAGAGAGTTTTCTTGTTTTAGTGTCAATTAAAGATTTGTGTGTGAAGTTACAAATGCAAATCTCATGACAGGATTCGGGCCTAAATGTTAtacatagagaaagagacagccatTTACCTCCTGGGTTCCTACGGATGAGCAGTTTTCGGATCTCATCATACACAAAAATGAGGACACTGTAGGGGACCGCACAGAACCACCAGCTGGgcTTTAGGGGGAACATCCTGAGTGCCACGTCCATGCCTGGGGTGTAGGATAGGAAGGCAGCCAGAGCTGTCTCCTCAAACAGGCCAAAGATCAGGATCTTGTTCCTAAGAGGAGAGTAGTGCAGAGGAGAGACATGAGAATGAGAATAAATataagagggtgagagagactaATATACATAGAGACCAAGCATACTGTATATTAACaaatgtagagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacag

Function

symbol description
atp1a3 Enables active transmembrane transporter activity; amyloid-beta binding activity; and chaperone binding activity. Involved in cellular monovalent inorganic cation homeostasis; inorganic cation transmembrane transport; and neuron projection maintenance. Located in several cellular components, including Golgi apparatus; endoplasmic reticulum; and neuronal cell body. Part of sodium:potassium-exchanging ATPase complex. Implicated in alternating hemiplegia of childhood; bipolar disorder; dystonia 12; and epilepsy.

NR:

description
Na+/K+-ATPase alpha 3b

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU279822 False 1464 lncRNA 0.45 2 30518427 30576217
TU279815 False 1174 lncRNA 0.45 2 30569859 30576217
TU279816 False 1978 lncRNA 0.44 2 30573188 30576217
TU279820 True 1979 lncRNA 0.44 2 30573188 30576217

Neighbor

gene id symbol gene type direction distance location
LOC110517711 LOC106583306 coding downstream 156657 30343960 ~ 30361770 (-)
LOC110517657 themis2 coding downstream 182255 30323757 ~ 30336172 (-)
smpdl3b smpdl3b coding downstream 213874 30298757 ~ 30304553 (-)
LOC110517624 LOC106583256 coding downstream 268527 30223261 ~ 30249900 (-)
LOC110517552 LOC106583212 coding downstream 379724 30129253 ~ 30138703 (-)
LOC110517778 LOC106583350 coding upstream 1581 30577798 ~ 30591085 (-)
LOC118951153 LOC106605099 coding upstream 15886 30592103 ~ 30593827 (-)
LOC110517847 tpi1b coding upstream 30747 30606964 ~ 30611799 (-)
gnb3a LOC106583400 coding upstream 121590 30697807 ~ 30710196 (-)
p3h3 LOC106583419 coding upstream 137689 30713906 ~ 30725406 (-)
G245157 NA non-coding downstream 19853 30498015 ~ 30498574 (-)
G244607 NA non-coding downstream 74461 30443750 ~ 30443966 (-)
G244606 NA non-coding downstream 75367 30442650 ~ 30443060 (-)
G244604 NA non-coding downstream 75990 30442120 ~ 30442437 (-)
G244580 NA non-coding downstream 95444 30422762 ~ 30422983 (-)
G245204 NA non-coding upstream 41678 30617895 ~ 30619600 (-)
G245219 NA non-coding upstream 66137 30642354 ~ 30652907 (-)
G245188 LOC106605095 non-coding upstream 88986 30665203 ~ 30667510 (-)
G245278 NA non-coding upstream 134937 30711154 ~ 30711398 (-)
G245279 NA non-coding upstream 135827 30712044 ~ 30712280 (-)
G244393 LOC106583245 other downstream 300838 30211570 ~ 30217682 (-)
G244381 LOC106583245 other downstream 318657 30199232 ~ 30199770 (-)
G244379 NA other downstream 341019 30174013 ~ 30177408 (-)
G244338 NA other downstream 389213 30088843 ~ 30129214 (-)
LOC110517486 LOC106583166 other downstream 1060381 29456450 ~ 29458390 (-)
G245366 LOC106605077 other upstream 368736 30944953 ~ 30945843 (-)
LOC110518371 LOC106583543 other upstream 986328 31562384 ~ 31631107 (-)
G248239 LOC106605043 other upstream 2843212 33419429 ~ 33419707 (-)
G249485 LOC106584080 other upstream 3781058 34357275 ~ 34359451 (-)
G249978 NA other upstream 4313289 34889506 ~ 34889954 (-)

Expression


Co-expression Network