G245219


Basic Information

Item Value
gene id G245219
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 30642354 ~ 30652907 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU279937
GGATGTGAGGATGACGATcccatgtcagaatggttcagaaaaAAACTACAGAACGAaaccaacatcagcatgagctttggttgcgaatggtatgaactttgaactcttattcacgacagaagtgatacctcctagccgttgagttagcgaccgcagctgcaaacgcaggttaggaaggaacagacagagtatcccatccaCCACACAACGACGTCACTACAACTTATCCAAGGGACCACCATAGACATTtttcaaaggacagaggactcggtttggcaacacggccttccaccTACCACCAActtactgaagcgcagctcagaCTGGAGGGTGAAATGGTCTCCGGATACGGCCGCGGCAATAGAGTCGGGTACCATGGCAACATGGGTGGAGCCATTGAAGGAGAACACCAGGGATGAATCAGAAGAAGGGAGGGTGGGCAAGGCTGAGGTCCAATTGGCTGCTGGGGACGGGGGCGGGAGTAAGTCCACTTCACCTCTCA

Function

NR:

description
calsyntenin-3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU279937 True 502 lncRNA 0.52 2 30642354 30652907

Neighbor

gene id symbol gene type direction distance location
LOC110517847 tpi1b coding downstream 30555 30606964 ~ 30611799 (-)
LOC118951153 LOC106605099 coding downstream 48527 30592103 ~ 30593827 (-)
LOC110517778 LOC106583350 coding downstream 51269 30577798 ~ 30591085 (-)
LOC110517711 LOC106583306 coding downstream 280584 30343960 ~ 30361770 (-)
LOC110517657 themis2 coding downstream 306182 30323757 ~ 30336172 (-)
gnb3a LOC106583400 coding upstream 44900 30697807 ~ 30710196 (-)
p3h3 LOC106583419 coding upstream 60999 30713906 ~ 30725406 (-)
LOC110518094 LOC106583440 coding upstream 147390 30800297 ~ 30811533 (-)
LOC118951441 NA coding upstream 160392 30813299 ~ 30818102 (-)
LOC110518140 cep85 coding upstream 208107 30861014 ~ 30881486 (-)
G245204 NA non-coding downstream 22754 30617895 ~ 30619600 (-)
G245127 atp1a3 non-coding downstream 66137 30518427 ~ 30576217 (-)
G245136 NA non-coding downstream 81577 30544615 ~ 30560777 (-)
G245157 NA non-coding downstream 143780 30498015 ~ 30498574 (-)
G244607 NA non-coding downstream 198388 30443750 ~ 30443966 (-)
G245188 LOC106605095 non-coding upstream 12296 30665203 ~ 30667510 (-)
G245278 NA non-coding upstream 58247 30711154 ~ 30711398 (-)
G245279 NA non-coding upstream 59137 30712044 ~ 30712280 (-)
G245308 NA non-coding upstream 125284 30778191 ~ 30780965 (-)
G244393 LOC106583245 other downstream 424765 30211570 ~ 30217682 (-)
G244381 LOC106583245 other downstream 442584 30199232 ~ 30199770 (-)
G244379 NA other downstream 464946 30174013 ~ 30177408 (-)
G244338 NA other downstream 513140 30088843 ~ 30129214 (-)
LOC110517486 LOC106583166 other downstream 1184308 29456450 ~ 29458390 (-)
G245366 LOC106605077 other upstream 292046 30944953 ~ 30945843 (-)
LOC110518371 LOC106583543 other upstream 909638 31562384 ~ 31631107 (-)
G248239 LOC106605043 other upstream 2766522 33419429 ~ 33419707 (-)
G249485 LOC106584080 other upstream 3704368 34357275 ~ 34359451 (-)
G249978 NA other upstream 4236599 34889506 ~ 34889954 (-)

Expression


Co-expression Network