XLOC_000022 (mrpl16)


Basic Information

Item Value
gene id XLOC_000022
gene name mrpl16
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 524388 ~ 532429 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000048
CAGAAATATATCAGAGCTGTTTTATTTGTGTGCAAAATCTGTTTTGATAGTCGCTCAAGTAACGAATTCTAACTTAGTGTGCACTAGGCTTATATGATTTAGTATGCTAATTTAAGTTAGCCACTTTGCTAATACTGAACGCTAAATGTAAATATCAAAcgtttgatattattatttactcTATTAAACTACGAGGGTTTTGGATACAAcaaataaataaataaacgagaaaacaaatataaaaaaatcaagcgGAACTGAAGTTTGCCGATTTCCCACCGACGGAGTTTCACTGACACACCGCATGTTGATCAAACATGGCAGCGACCTTGTGGAGCCGACGTGAATTATAACTGgcagaaatgaacatttatacatatttacattGCAAAAATACATAAGCTGCATATTCAGTCATGTTCCCGGTAGTGAAGAGTGTCTTTCTGGGCATTGTCCGGTCGTCCAGTCAGAGAGATGTGCTGCAGAAGCAGATGAAGCTGCTGTCGGCGGGGATGAGGACCTATGAAATCCCTCCAGACTTCAGCGatgTGGAGTTACCAGAGAAGCCCAAACTCAAGTTCATGGAGAAAGTGCCGAATCTGAAACAAGCCAAGAAGGAGATGAAGAGGCTGCGGGACATTCAGGGCCCGTCCCGAACCGCCACCAAATTCAGCCAGGGACAGTACGGCATTCTGgCTCTGGGTGGAGGGTTCCTGCACTGGGGTCACATAGAGATGATGCGTCTGACCATAAACCGCAGCATTGACCCCAGCAGCATGTTTGCGGTGTGGCGTTTCCAGCCTCCACACAAACCAATCACACGCAAGAGTCTGGGTCAGCGCATGGGCGGAGGCAAGGGCGCCATCGACCACTACGTGACGCCCATCAAGTGTGGACGGCTAGTGCTGGAGATGGGGGGACAACTGGAGCTGGTCCAGGTGGAGGCCATGCTCAAACAAGTGGCCAAAAAACTGCCCTTCCCTGCCAAGgtggtgAGCAGAGAGAGTCTGGCGTTGATGTATAAGGAACATGCTGAACGTGTCTCCAACAACCAGAACCCCTGGAGCTTCCAGAAAATTGTCCGCTCCAACATGCTGGGCATCCGGAAGGTTCTGAGCCCGCTGGACGTACACAACCACGGCAGATACACCGGGAAGTTCTTTGACCCCAGCAGGgtatagagagtgtgtgtgtgtgtgtgtgtgtgtgtgagagtgtgtatgtgtgtctgagaGAAAGTATGTGTGCTTGTATGCccatgagtatgtgtgtgtgtgtgtgtgtgcgtgcgtgtgtgagaCAGATGTGTTATCACTCAGATGATGAACACACACTCGAGCAGGATGTGGTGTGCTAATATTTAGAAAGCTTTTATAAGCAGAAGATCCAGATCAGTTGTTTTGAGTGGTCGGCTCTTTTATCACACATGTTTTGCAAGACTTTCAGcttttacacacacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacctaacatGTAATCCATACATGTTCACCTGTCTACGGTCAAATCTGTGAGTGTCTACATGTCAAATGCACATGCTGACagtgtgtataataaataaatgtggtttGTT
>TCONS_00000049
ATGTTCCCGGTAGTGAAGAGTGTCTTTCTGGGCATTGTCCGGTCGTCCAGTCAGAGAGATGTGCTGCAGAAGCAGATGAAGCTGCTGTCGGCGGGGATGAGGACCTATGAAATCCCTCCAGACTTCAGCGatgTGGAGTTACCAGAGAAGCCCAAACTCAAGTTCATGGAGAAAGTGCCGAATCTGAAACAAGCCAAGAAGGAGATGAAGAGGCTGCGGGACATTCAGGGCCCGTCCCGAACCGCCACCAAATTCAGCCAGGGACAGTACGGCATTCTGgCTCTGGGTGGAGGGTTCCTGCACTGGGGTCACATAGAGATGATGCGTCTGACCATAAACCGCAGCATTGACCCCAGCAGCATGTTTGCGGTGTGGCGTTTCCAGCCTCCACACAAACCAATCACACGCAAGAGTCTGGGTCAGCGCATGGGCGGAGGCAAGGGCGCCATCGACCACTACGTGACGCCCATCAAGTGTGGACGGCTAGTGCTGGAGATGGGGGGACAACTGGAGCTGGTCCAGGTGGAGGCCATGCTCAAACAAGTGGCCAAAAAACTGCCCTTCCCTGCCAAGgtggtgAGCAGAGAGAGTCTGGCGTTGATGTATAAGGAACATGCTGAACGTGTCTCCAACAACCAGAACCCCTGGAGCTTCCAGAAAATTGTCCGCTCCAACATGCTGGGCATCCGGAAGGTTCTGAGCCCGCTGGACGTACACAACCACGGCAGATACACCGGGAAGTTCTTTGACCCCAGCAGGgtatagagagtgtgtgtgtgtgtgtgtgtgtgtgtgagagtgtgtatgtgtgtctgagaGAAAGTATGTGTGCTTGTATGCccatgagtatgtgtgtgtgtgtgtgtgtgcgtgcgtgtgtgagaCAGATGTGTTATCACTCAGATGATGAACACACACTCGAGCAGGATGTGGTGTGCTAATATTTAGAAAGCTTTTATAAGCAGAAGATCCAGATCAGTTGTTTTGAGTGGTCGGCTCTTTTATCACACATGTTTTGCAAGACTTTCAGcttttacacacacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacctaacatGTAATCCATACATGTTCACCTGTCTACGGTCAAATCTGTGAGTGTCTACATGTCAAATGCACATGCTGACagtgtgtataataaataaatgtggtttGTTTGCAGTGTGAGGGTTTCTTTGCAGTGTACGTCCTACACTATTATTGATTTAGACGTGTAcaattgatttgatttatttatttttgatcaaaaatatcatacataaaatatcattaaaaaaatgcatttcaacATGGTGGAAAAAGGAGTTTGATGAAGCACAAGCtcattattttcccaccccattaccacatacttCATTCGTCTATTATTAAAACTCATTTCTTCTTTTactcatctctttttttttacatgagacatagtttatccttttggcatctttgacatatgtttaaatccatttttacctttacattttgtaacagacccaaagaaaaacaaaacaaacacagtgattaaatagccattaattaaagTTTCATCAGAGCCTTCTCATTTTATCTTTTTTCAATCTCcctcatcattatattcctttaataatatatatctGTACCACTTTTTAAACTGATTATGATGCTGACATTACATTGTTTgagagtctgatctagactgttccataattttCTACACACatcattaatataaattataaacaacattggacctaaaactgatccttgtggTATGCCACACTTTACATTTAGATATGATGATTTATGGTTGCCGATTTTCACCAACTGttgactatttttttaaataactgcttatcTAGTCAAAGGCTACTCCTCTAATACCATACCTTTAATTTATTTAccaatatattatgatttattgtatcaaataccttctttaaatctataaaaaatcCAACTACCTTCTCCTTTTTATCTATCTTATACAAAATTATACATATAAAGATAAATACACAAGTATATTAATTAAAAGAAAGTTAAATGACAGTGTAATGTAATTTTAACTTAaactttagtcatttttattgtgttttttagtttttattaaaataatgtatcatttttttcatgtttattttaaatactcGTATTATTTTGGTTGTTTTTCTTCCCAATTCCTTTGTGTTATATTTTAACATGTACATACACATTTCCATGTGTCAGATTTAACATaaaccaacaaataaacaaacaaaacaaagggcTTCTCAGTATAATATCCCGTCTTTTACTAATCatctagtaaaacatttttaccaccttttaaaacaacataaaagctCCCCAAACTGtataaaaattatgtatttatttttttatatatttatttattttttaatatatgttattCTTTCCCATTGACATGTTTACTACCATCTCTTTAagccaaatttattttaaaaattattgaaaaatatatttaaaaaatatttggagaggggtctggctgcagacctggtgcagtgcaatctgggttgcatccaatgctttttaatgggctcacctaactccacccctaaccctacctgtcacagtgacgtcactagctccattgtgtctgacattgcaacgctgagtgatgcagtctcagcttgcatcataaaggctgcatccagatacta

Function

symbol description
mrpl16 Predicted to enable rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in mitochondrial translation. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL16 (mitochondrial ribosomal protein L16).

GO:

id name namespace
GO:0006412 translation biological_process
GO:0032543 mitochondrial translation biological_process
GO:0005762 mitochondrial large ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-041122-1 Predicted to enable rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in mitochondrial translation. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL16 (mitochondrial ribosomal protein L16).

Ensembl:

ensembl_id ENSDARG00000075325

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000048 False 1624 mRNA 0.47 6 524388 530935
TCONS_00000049 True 2702 mRNA 0.39 5 524821 532429

Neighbor

gene id symbol gene type direction distance location
XLOC_000021 txnl4b coding upstream 6312 513986 ~ 518076 (+)
XLOC_000020 blzf1 coding upstream 18768 494297 ~ 505620 (+)
XLOC_000019 tpp2 coding upstream 80629 418869 ~ 443759 (+)
XLOC_000018 NA coding upstream 165826 355481 ~ 358562 (+)
XLOC_000017 cenpe coding upstream 228331 260039 ~ 296057 (+)
XLOC_000023 mrpl39 coding downstream 337 532766 ~ 591331 (+)
XLOC_000024 dre-mir-155 coding downstream 44015 576444 ~ 576521 (+)
XLOC_000025 jam2a coding downstream 62155 594584 ~ 608247 (+)
XLOC_000026 NA coding downstream 262547 794976 ~ 911551 (+)
XLOC_000027 n6amt1 coding downstream 429178 961607 ~ 970951 (+)
XLOC_000011 NA non-coding upstream 367106 156792 ~ 157282 (+)
XLOC_000028 NA non-coding downstream 483383 1015812 ~ 1033638 (+)
XLOC_000029 CR450787.2 non-coding downstream 686262 1218691 ~ 1218805 (+)
XLOC_000030 NA non-coding downstream 782860 1315289 ~ 1342237 (+)

Expression


Co-expression Network