G245468 (LOC106583495)


Basic Information

Item Value
gene id G245468
gene name LOC106583495
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 31124920 ~ 31126231 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU280212
TAATGTTAGCACCAAAGACTTTGCACCTCACTAGAACTCTATAGATGTGAATGTTATCCTGAGTTGATCGTTGCAAAACGGAGATAAagctatgtaaaaaaaaaatacatgacaTTTTCAATGAAAGAGACAAAGAGGAAGACTCTTAGGGGCTTTAAGCTGGACATTTGGTCTTCACACAGGGAAAGTCTCAACTGCATTCTCTCCCCTCGCCTCCTTCTCCAACCCAATGGATGAAAAGGTCAGACAGAGGTCACTCCCCTATAACTTCTTATCCAacgggttttgagaaggaggtgaggagaggactcgaggaatcaaggaaatccAGATGAGATTCTCGCCACAGTCACCGACTAGTCCACCTCCACCTTCTCCAGAACCACATTGTGTGGCGTTCCATCCAGGTAGTAGACCATCCTCTCCCCAGCCTGGCCTTCTGAAACTCCCTCGCTCTGCTGGTCGTCCTCCCCTCCCTGGTGCTGGGTGTACATGGTCCCCTCCACCTGCAGGGTATTGTCATCCAACTCCGTCACGATGTAGTGGGTCCCTTCATCGTTGACGATCACCTGCGTCAGCCCCTCCTTCATCAGATGGCTGGCTGCAAACTGCAGAACCTCCTGGACCACCTGCTCCTCCTGCACCTGCTGCTCCTCCCACACCTCCTCCCCCGTCTTCACCTccgcctcctcctcttcctccaccacgTCTGACACAACTTCCTGAGTCATGACCTCTTGGCTGTCCTCTTCCTGCTGGCCCATCTCGCTGACGGCACTGAGGAGGGCATCCAGAGCCGTGGATGACTCCGACACCATGTGGTGGTGCGTCGCCCCTCCCCCATGACCCCCGTGACCTCCGGCTGCAGACCCGCCGGACTCCAGCAGGACGTACCGGGTGGTGCCTCCGGCCAGGTGATGGGCCCCGCCTGCAGACACCTCCCTCCCCGAGGAGATGACCTGGCCGTCCTCGGTGATATGTAGCACCTCGGCCACCTGTCCCGCCATGGCCAGGTCTCGCAGGGTGGCAGCGGCTGACTCTTCCAGGGCCTGGTCGAAGGCCATCTCCCCACTGCCGTAACCCTGGATGATGATCACCTGCTGGACACCCTCC
>TU280211
CTATTATTCTCCAACTTTCAACAAAAACAAATCGCGCAACTTAAAGATTGTACGTCTTTCTAGATAACGGGAACATTTCCCGTTATGtaatcttaaaagtattatttttgCAACTGAAAATAGCCTATGTATTTCCAGTCATGACTCCAAAAACAAGTGGTAATTCTGGTGTTGGTCATAAAATAATGCAAATGTTAAATAATGTTAGCACCAAAGACTTTGCACCTCACTAGAACTCTATAGATGTGAATGTTATCCTGAGTTGATCGTTGCAAAACGGAGATAAagctatgtaaaaaaaaaatacatgacaTTTTCAATGAAAGAGACAAAGAGGAAGACTCTTAGGGGCTTTAAGCTGGACATTTGGTCTTCACACAGGGAAAGTCTCAACTGCATTCTCTCCCCTCGCCTCCTTCTCCAACCCAATGGATGAAAAGGTCAGACAGAGGTCACTCCCCTATAACTTCTTATCCAacgggttttgagaaggaggtgaggagaggactcgaggaatcaaggaaatccAGATGAGATTCTCGCCACAGTCACCGACTAGTCCACCTCCACCTTCTCCAGAACCACATTGTGTGGCGTTCCATCCAGGTAGTAGACCATCCTCTCCCCAGCCTGGCCTTCTGAAACTCCCTCGCTCTGCTGGTCGTCCTCCCCTCCCTGGTGCTGGGTGTACATGGTCCCCTCCACCTGCAGGGTATTGTCATCCAACTCCGTCACGATGTAGTGGGTCCCTTCATCGTTGACGATCACCTGCGTCAGCCCCTCCTTCATCAGATGGCTGGCTGCAAACTGCAGAACCTCCTGGACCACCTGCTCCTCCTGCACCTGCTGC

Function

NR:

description
LOW QUALITY PROTEIN: zinc finger protein 407-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU280212 False 1113 lncRNA 0.57 1 31124920 31126032
TU280211 True 850 lncRNA 0.46 1 31125382 31126231

Neighbor

gene id symbol gene type direction distance location
LOC110518255 nr0b2 coding downstream 191760 30930661 ~ 30933160 (-)
LOC110518189 NA coding downstream 241362 30881668 ~ 30883558 (-)
LOC110518140 cep85 coding downstream 243434 30861014 ~ 30881486 (-)
LOC118951441 NA coding downstream 306818 30813299 ~ 30818102 (-)
LOC110518094 LOC106583440 coding downstream 313638 30800297 ~ 30811533 (-)
LOC110518336 zadh2 coding upstream 32195 31158426 ~ 31163476 (-)
LOC110518297 LOC106605073 coding upstream 240291 31366522 ~ 31418894 (-)
LOC110518371 LOC106583543 coding upstream 436153 31562384 ~ 31631107 (-)
LOC110518398 NA coding upstream 833812 31914252 ~ 32004356 (-)
LOC110518433 ct054 coding upstream 1115436 32241403 ~ 32246402 (-)
G245460 NA non-coding downstream 24299 31100309 ~ 31100621 (-)
G245455 NA non-coding downstream 33551 31091070 ~ 31091369 (-)
G245454 NA non-coding downstream 33988 31090655 ~ 31090932 (-)
G245452 NA non-coding downstream 41707 31082908 ~ 31083213 (-)
G245451 NA non-coding downstream 42223 31082455 ~ 31082697 (-)
G245481 NA non-coding upstream 929 31127160 ~ 31127395 (-)
G245482 NA non-coding upstream 5516 31131747 ~ 31131964 (-)
G245494 NA non-coding upstream 25401 31151632 ~ 31151864 (-)
G245475 NA non-coding upstream 30789 31157020 ~ 31157830 (-)
G245502 NA non-coding upstream 47013 31173244 ~ 31173738 (-)
G245366 LOC106605077 other downstream 179077 30944953 ~ 30945843 (-)
G244393 LOC106583245 other downstream 907331 30211570 ~ 30217682 (-)
G244381 LOC106583245 other downstream 925150 30199232 ~ 30199770 (-)
G244379 NA other downstream 947512 30174013 ~ 30177408 (-)
G244338 NA other downstream 995706 30088843 ~ 30129214 (-)
G248239 LOC106605043 other upstream 2293198 33419429 ~ 33419707 (-)
G249485 LOC106584080 other upstream 3231044 34357275 ~ 34359451 (-)
G249978 NA other upstream 3763275 34889506 ~ 34889954 (-)
G249990 NA other upstream 3769727 34895958 ~ 34896296 (-)

Expression


Co-expression Network