G247131 (LOC106605059)


Basic Information

Item Value
gene id G247131
gene name LOC106605059
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 32596856 ~ 32638188 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU282007
TGGTTTTTGCACGTCTGTTTTATTGAATCACTGATGACTTGAACcaagagcaaaaaaataaataaatcctctGCTCCTTGAGAGACAAGCAGAAAAAAACAGGATGTTGTTGCTGGATGGGAATGCTGTGTAGGAACAGGAATAAAAATATTCTCAGTGGTGTCTTGCTAAAAGCCAGTCTCTTGACCTGCCCAGTTGGGTCTCCGCCTCCTCGGGGGTCATGTTCAGCTTGTCTGCCAGCATGCTGATGCTGATGCACTGGTGGATCCTGCAGAAAGTCTCAAAGATGAACAGACGGGCATTCTCAATGAAGTCCTCCAGGCAAGCCACCAGGAAGAAGTCATTCACAAGCAcCGACTCACACTCCCTCAGTTTCTTCTGAGCGCTGTCAAAGTCAAAGTTCACATACAGGCACTCCACAAACTCTGTGATGGGATCTTTGTAGGTGTAGGACTCctgctGTATGACCTTGACCAGATCTTTCAGGACCTGCCGCCGCTTGCGAACGTCTTTGTTTGTGATGACAGCTGTGGTCAGGTAACGCAGAATGTGTGGGCACATGGTCTGAATGGCGTTGAGGTACTGGGGTTGATACAGGAAGAGCTCAATGATGTTGTCTCTGCCTTTGGGGTGGTTAAAGAAGACGAATAGGGACCAGTGGATCAGCCAGGTCCTCTGCTGAAGAGACTGGAGGGGGGAGCTCACCGaGTTGTTATCGATAGTCTCCCTAAGGCGGGTGAGGTCTTCCATCGCAGCCTCCCAGTTCTGCATCAGGATCTCAGAGGCCAGCTTCCCCCACAGGGAGTTCAGGGCGTTCCTGTCTGTGGCCGGGACCAGGACACGGAAGAAGTAGAGGTACTCGGCAGCCCCAGAGTAGTTTCCACACTCGTACTGGAACTTGGCATATCTGTACAGAGTGTCCAGGTACTCCTGACGGAAGCTGTGTTTCTCCGCCAGATAGTTAAAAAGGGCCTGTCCATccCTGGTTGACTGCATCTGTTTAGTGGTCTCTGGGTCCTCAAACATCTTCACAATGGGCTCGGTCTCACCCTGCAGCTGCTTCAGCTGAGCCACCACAGTGATCCTCTTCTCTTTTAGGGTGGCGGGGATCTCTTTCTCAGGGAAGAGGTTTTTGTGTACATCCATGGCAAAGTCCACCATGTTGGTCTCGCTAAGGAGATCCAATTTTCCATGAAGCAATTCTTTCTCATTGTAGCTCTTTGACAGAAAGGAATTCCAGCAAAGGAAAGACGAGATGTCGGTCCAAAAAATGGGCAATTTTGGTGGTGAGGTCGTACTCCGCCATTTTCACCGcgagagaggaggaagtagacGCGCGAACGTGTTACGTCATTTGACCAATCAGCGTCACTTTCAGCATCAGTACCTGCATGGATTGGCCATATTGATGATGAACTATTATTAACTACTATTTTAA
>TU282008
TGGTTTTTGCACGTCTGTTTTATTGAATCACTGATGACTTGAACcaagagcaaaaaaataaataaatcctctGCTCCTTGAGAGACAAGCAGAAAAAAACAGGATGTTGTTGCTGGATGGGAATGCTGTGTAGGAACAGGAATAAAAATATTCTCAGTGGTGTCTTGCTAAAAGCCAGCTCTTTGTCTTCTCAATCACCTGCTGGTACGGCGACACAGCGTTGTTCCCCATCACCACGTGACCCAGTTTGGAGTCTATCTTGGCATCCAGCCTGGCGTTGCGGATAAGGTTGACAATCCATCTCTCCGCCTCCTCGGGGGTCATGTTCAGCTTGTCTGCCAGCATGCTGATGCTGATGCACTGGTGGATCCTGCAGAAAGTCTCAAAGATGAACAGACGGGCATTCTCAATGAAGTCCTCCAGGCAAGCCACCAGGAAGAAGTCATTCACAAGCAcctggaagagatggagggaaataaAAGTTAGCAGTAATACAAATATTGCAGTGAGTATTTGCCTCGGTGTATGCATTTCTATAGAAGACCACTGCAGGGTTAAAGGAATGTAAAACAGTTAAATGAATGTTAAGCTTTTTAGTAAACTCATTAGGGCAATCAAGACTGGATTCTGACTGAGTGGCCCTGGAGAGCCATAAAAGTGCAGCAGTAACAGGTTTCCCTTGCAGTCCTTATTTGGGATTGAGGCCCGG

Function

NR:

description
Eukaryotic translation initiation factor 3 subunit 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU282007 False 1438 lncRNA 0.49 12 32596856 32638188
TU282008 True 709 lncRNA 0.45 4 32596856 32604430

Neighbor

gene id symbol gene type direction distance location
LOC110518684 LOC106583734 coding upstream 325151 32268649 ~ 32271705 (+)
LOC110518416 LOC106583607 coding upstream 367139 32150619 ~ 32229717 (+)
LOC110518407 LOC106583590 coding upstream 572314 32007036 ~ 32024542 (+)
LOC110518390 LOC106583575 coding upstream 936236 31650612 ~ 31660620 (+)
LOC110518348 LOC106583530 coding upstream 1038273 31473284 ~ 31558583 (+)
LOC110518706 LOC106583752 coding downstream 10223 32648411 ~ 32711431 (+)
LOC110518733 LOC106583759 coding downstream 132887 32771075 ~ 32777409 (+)
LOC110518743 eny2 coding downstream 212721 32850909 ~ 32852805 (+)
LOC110518767 NA coding downstream 381223 33019411 ~ 33035356 (+)
LOC110518846 LOC106583830 coding downstream 419708 33057896 ~ 33068611 (+)
G247160 NA non-coding upstream 973 32595455 ~ 32595883 (+)
G246858 NA non-coding upstream 114158 32482313 ~ 32482698 (+)
G246857 NA non-coding upstream 115023 32481439 ~ 32481833 (+)
G246853 NA non-coding upstream 119907 32476697 ~ 32476949 (+)
G246852 NA non-coding upstream 121095 32475454 ~ 32475761 (+)
G247381 NA non-coding downstream 75301 32713489 ~ 32713732 (+)
G247392 NA non-coding downstream 83344 32721532 ~ 32721797 (+)
G247393 NA non-coding downstream 83839 32722027 ~ 32722293 (+)
G247402 NA non-coding downstream 90497 32728685 ~ 32728972 (+)
G246282 NA other upstream 737537 31852668 ~ 31859319 (+)
G245930 NA other upstream 916216 31669958 ~ 31680640 (+)
G245799 NA other upstream 971813 31492207 ~ 31641357 (+)
G244991 NA other upstream 1509601 31086769 ~ 31087255 (+)
G244956 NA other upstream 1559604 31036517 ~ 31037252 (+)
G248134 NA other downstream 785601 33423789 ~ 33424103 (+)
G248750 LOC106583978 other downstream 1190032 33828220 ~ 33835275 (+)
G248794 NA other downstream 1336288 33974476 ~ 33977835 (+)
G248795 NA other downstream 1367970 34006158 ~ 34013057 (+)

Expression


Co-expression Network