G247453


Basic Information

Item Value
gene id G247453
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 32779533 ~ 32780725 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU282344
cattgcagagttatgtgcgtCATTtaaagcacacccttctcattaacctgtggtgagttattcatttttttcgatgaacaaataaagttttatatgtaagatggctaaataaagagtaaaatgattgattattattatattattatttgtgccctgatcctgtaagagctctttgtcacttcccacgagccgggttgtgacaaaacctcacattcattcttatgtttaataaatgtattgtgtagtatgtgTATGGCAGGCTTtaaatgatgg
>TU282351
ctggtgctagagggggtacacatctggaggttgaacgtttgaaggggtacgggaatATAAcatgtttgggaaccactgccacAGAGCAAAGGCGAGATTAGAGGATTCATCAATGCCAAAGTGTCCTACTTTGGAGATTTGAGGGGGGCTGGTGTGTCATGGTACAGCCATAAAGCATGGGCACAGtgtcaaaaaacagaaatataaagCATAAAAGGAATGAGCATTGATTGAATTTAGAATTCAAATCAAGAAAAAATATACAGTTCTTAGCTGTTTATTTTATGCTGATGAAACGCCCTCTCTGTCCCTTTTGGGATGCTGTAAAAATGCTTGCAAGTGATTGTTCGGTACCATGAGAAATGTATGTTTTTCAATGTATGTTTCAGACCTGTTTTCAATCCGTACCTTTGCCCAATTTAAATTGTCTGCCAGTAGAGCTATTGCGTAATAACGTTGTTTGTTTGGTtcagttttattgttttgttccaatCAATGTACAGTATTTTTGCTATGGAgcgatcaatgtggagctacgcTGTTCTTCTTTGGTAACACTACAACTGCAGTATGTTTCAGAGAAGGTATGTGCACTTTCATCTACTGTCTCCGCTGCACAGTTTCCACCATAAAAGGGAGTGGTGCCTGGTAGCGAGTTTGCAGCATGGACACTGTAAaacaaatgatgttgtggtgtgATTTCAAAAAGAAAGAAAtctatgtacag
>TU282353
ctggtgctagagggggtacacatctggaggttgaacgtttgaaggggtacgggaatATAAcatgtttgggaaccactgccacAGAGCAAAGGCGAGATTAGAGGATTCATCAATGCCAAAGTGTCCTACTTTGGAGATTTGAGGGGGGCTGGTGTGTCATGGTACAGCCATAAAGCATGGGCACAGtgtcaaaaaacagaaatataaagCATAAAAGGAATGAGCATTGATTGAATTTAGAATTCAAATCAAGAAAAAATATACAGTTCTTAGCTGTTTATTTTATGCTGATGAAACGCCCTCTCTGTCCCTTTTGGGATGCTGTAAAAATGCTTGCAAGTGATTGTTCGGTACCATGAGAAATGTATGTTTTTCAATGTATGTTTCAGACCTGTTTTCAATCCGTACCTTTGCCCAATTTAAATTGTCTGCCAGTAGAGCTATTGCGTAATAACGTTGTTTGTTTGGTtcagttttattgttttgttccaatCAATGTACAGTATTTTTGCTATGGAgcgatcaatgtggagctacgcTGTTCTTCTTTGGTAACACTACAACTGCAGTATGTTTCAGAGAAGGTATGTGCACTTTCATCTACTGTCTCCGCTGCACAGTTTCCACCATAAAAGGGAGTGGTGCCTGGTAGCGAGTTTGCAGCATGGACACTGTAAaacaaatgatgttgtggtgtgATTTCAAAAAGAAAGAAAtctatgtacagtatacagtttCTCTTCACTCAGCAATGTTGTGCAACCTGGTCTCTCCTGCTGGCAGTTCTCTGCCATTGTAAAAACTGCTCTTGTTGCTTGGATGGTTTGTGTTTTGTATTTTGCATTGTTATTTGTCTATAAGAAAATAAATGGATCACTGATCATGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU282344 False 273 lncRNA 0.34 1 32779533 32779805
TU282351 False 727 lncRNA 0.40 1 32779838 32780564
TU282353 True 888 lncRNA 0.40 1 32779838 32780725

Neighbor

gene id symbol gene type direction distance location
LOC110518733 LOC106583759 coding upstream 2124 32771075 ~ 32777409 (+)
LOC110518706 LOC106583752 coding upstream 68102 32648411 ~ 32711431 (+)
LOC110518684 LOC106583734 coding upstream 507828 32268649 ~ 32271705 (+)
LOC110518416 LOC106583607 coding upstream 549816 32150619 ~ 32229717 (+)
LOC110518407 LOC106583590 coding upstream 754991 32007036 ~ 32024542 (+)
LOC110518743 eny2 coding downstream 70184 32850909 ~ 32852805 (+)
LOC110518767 NA coding downstream 238686 33019411 ~ 33035356 (+)
LOC110518846 LOC106583830 coding downstream 277171 33057896 ~ 33068611 (+)
LOC110518871 LOC100194712 coding downstream 305784 33086509 ~ 33172715 (+)
tpbgb LOC106583879 coding downstream 560642 33341367 ~ 33344522 (+)
G247402 NA non-coding upstream 50561 32728685 ~ 32728972 (+)
G247393 NA non-coding upstream 57240 32722027 ~ 32722293 (+)
G247392 NA non-coding upstream 57736 32721532 ~ 32721797 (+)
G247381 NA non-coding upstream 65801 32713489 ~ 32713732 (+)
G247481 NA non-coding downstream 12609 32793334 ~ 32793537 (+)
G247541 NA non-coding downstream 54706 32835431 ~ 32835630 (+)
G247574 NA non-coding downstream 102191 32882916 ~ 32883137 (+)
G247580 NA non-coding downstream 111468 32892193 ~ 32892437 (+)
G247680 NA non-coding downstream 196820 32977545 ~ 32992448 (+)
G246282 NA other upstream 920214 31852668 ~ 31859319 (+)
G245930 NA other upstream 1098893 31669958 ~ 31680640 (+)
G245799 NA other upstream 1154490 31492207 ~ 31641357 (+)
G244991 NA other upstream 1692278 31086769 ~ 31087255 (+)
G248134 NA other downstream 643064 33423789 ~ 33424103 (+)
G248750 LOC106583978 other downstream 1047495 33828220 ~ 33835275 (+)
G248794 NA other downstream 1193751 33974476 ~ 33977835 (+)
G248795 NA other downstream 1225433 34006158 ~ 34013057 (+)
G249245 NA other downstream 1521847 34302572 ~ 34302907 (+)

Expression


Co-expression Network