G247789


Basic Information

Item Value
gene id G247789
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 32932227 ~ 33025716 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU282717
TGGAATGGTCCCATGGTGCTTAACGCTGCCTTTTCCCCTTTGGATCTGTGAGAAAAGTAAAACTAGGTGAGATGTATTTCTGTCCAAGGCATCATGACGTGGCACACTGGCACTGAACCCTTTACGAACAAGGGGCGACTCTGTCTGGAATCTGTTATGTAAATCATGTCACCCCCGCCCACGTCCACCCCTGCCTGGCACAGATGGCACAGACACTGACCGGACCTTGGTCATTAAACCAGTGAGACCCACATCAAAAATAGGCTACCAGATGGAAAATATACTTGAAAATATTTTGCATGTATTTCCTCAAACATGGAACAAAGGCATGAGACCGTTTCTTACTTCCAATAAAACCAAAGCTTTACTGTCCTTCACAGAAAAATGCAACAACCTAAAAACGCATTATCCGATTACGTATCGATGTAATTGAAATGAAATCTAGTTGTGAATGACGCTGCAGATAGGAACTGGGTGCAGTTCTAACTCTTAATTTATTCATGTATTTCTAAATGATGTCCCACCAGGTGGAAAACAGACAGCAGCATCTTCAAACATCTATAAGAAAGAGGTTGACTAAGTGCCATGAGTTATTCTgccaagataaaaaataaaaaaaacagaaatatgacATCATTTCTTCCTTTTGGGATCCTGTGCCAAAGAGCCTTTTTCCTGCCAAATAGATGACACCAGAGAGTAACACACCGGCAAACCGCTCACTGAATATTGAGATAAGAATTACAGAATAATAGTGTACAATGTTTGGGTTGTATATCAATTTTCACATTCCCTATACAGGTAGTTCAATTCACCCTCTCCATTTTTGACTTAGACATGCAAAGGCCTCCAGGCACCAGTACATGCACAAAAGTGTATGTTTTATTGATGTTTGACGGCTGAATAATTCAAGGTTCACATAATGCCTGACTGCACATTATAACATACCTCCATTCTTtatccattccctctctcctgttgaatGTTGTGCCGCTTAGCATCATCGCTTAAAGGAGTTGGTTATGTAAGTGTGTACGTCTTTAGCCTTCTCCTTTTTTACATCAAGAATGACGTAATTGACCCCTAAGGTCGTTATCGCTTTCCTGAATCCAGACTTCTTCCCCCCCCCCCGTTACAgtccagctgctctctctttaTTTTGACTGCATGGCACCCAGGATGTTGGTAAATATAGCAGCTGTCCCTGTCACCAAGCAAACACCCCTCTTGAAATACACTGTGTAGCCTGACCATCATGTCTTCCACTACAGGTACGTTTTCAGCAAGTAAGGGCAAAGAAATCAGTTAAACAGTTAAACCACAAAAAATAATACTTGAAGGCAGGTTTTATACCAGATTGTATGCACTTTTAGTCTTCTAGGTCCCCCAGCCCTGATATGAGAACACCCCAAATGTTCCCCCGAAATTAGTTCAGCTTTTTGTACCTCTTAAGGCAACTGAGAAGTGTGTCATGAGCATCACAATAAAACAGCAGTACGCCAGCATTTTATGCCTCGATATGTTTTCCTTTTGTTTCTACCCGCCTCTGGATAGCTGGCACACAGCTTCAGAGTGGAATCAGATTAGGCAGCAGGCACAGTCACAGAGCTACCCACCAAACAATGCCCTAGCAACAGACTTAGCAACAGAGGAAAATTACTGCAAGGAAGACAGGCTAAATTGGGTCAATTAAATTTGCAGACAGTTCTATGTTCAGCATCTTCCGAGAGTGCAATAGGAAGGTTTTCCTCCTGCAACATAAAAAATGTCAATGTTGTTTACTTTGGGAGTGGCCTATGGCAGTGTGGGGGGAGTGTTACAGACTGGAACAAGGTCAGGTGTGCTCCCATATGAGTAAGTGCACGTGAGCCATTGTCTTTGTGCACTTCAACAGCAATCAATGTCAGGAAAATGCTATCAAGTTTGTGCATTGCTATACTCAATAGTTGTTATAGTATCATGTCCATACAGTGTCTCAATGCTGATTGAATCTCGGTAGTGCTTGTAAACCTCCTCCTGGGTCATGAGGAATGACCCAGGTAGAAGAAAAGGTCAAAGGAAATGGACTGAAACGGTGaaggactacctggacttgtcaAATAACAAGCACATATTTTCGCTTTCTgttacaaaatatttttttaaacatttcattTTCCAAGCAGGTAAATGTAACCCTGGTGGTCCCTTAGAGACCTGGGTGGAGGGTTGACAGCCTCAGATTCACAGAGAGATGTTTTTATCTAAGCCTGCCCAAGCATGCTCTCAGTAGATAAGATGCAAAACAACATGAGCATCTCCACAGCGGGAGCCGTATGGCTGCAACAAGCTCTCACGGTCTCACGTTAGAATTAGATGTTTGTCCATCTTTCTCAATCGAAATTTGACGCTTGAGAAAGATGGACGAACATGGACAAACGTTTAATTCTGACAACAGCCAGAGCGCCAGACGCCGCTGTGGAGATGGTCACGTTGGTCAACACCTCTCTGTGAATCTGAGGCTGTCAACCCTTCACCCAGGTCTCTATCTATCAAGGCACCTCCAGGGTTACATTTGTTCCCAATGTCAAATGtcgaagtgtttaaggttaagttcagccattaactctgaatttttaaggttagggcCAGGTTTGGGCATTAACTCTACATGTTTAAGGTTAGTGCCAGGttaaggcattaactctgaatttttaaggttagggccaggtttaggcattaactccaaaatcttaaggttaggcattaactccgaatgggctatggtaagggttaaggtttggggggaaaaatctaaaaaaacaactttctattgctGGATTCAAAATTGCAACCTGgcaccagaggcagatgcttaggcattaactctgaatgattTAGTTAAGGGACAAAAATCTAAAAAAACAACTTCTACAgctggatttgaacatgcaacctttggcacCAGAAGCAGATCCTTACACCCATCCCTGTCCACATCAAAAACATAAACCTACTTGAAACTAACaccgctcactgttgccccttgtGGATGGTTTCCACATAATCCCCTGACGTCCTCAGATATGGATTTAGGTCTACCACTGATTTGGCatcatgggtgacctggctgtGTTGTTCACAGTGTTCCTGGCTTTGTTCCTATGGCTGGAACTTATGCAATCAACTGGGCATCAAACCTGGGTGTTTTGCACAAGACTATGTTAGCTTACCAAGCTAAAGTCTATAGACCTCAGCTCTGGGAGTTAACAGTAATTTtctgttttaaattaaaatggtcaaaaagaaacaaaaatagcttcttagcaaagagcaatttctcaaagaagaattttgctaggactgtctgggagtggtctgagtgggaagggGAAAACTGAAATTAGCTgtcattggcagagaggtttggaacactctttgttattggtctattaacacatttaccacctggtgatgtcaccaggcaggccaaaatgccatcccaccaaaacaggctgacattttaGGTGGTCTATTCAAACAGCTCtaacactaaaagggcattatcataattttcacagttTCACGGTATTTTtctaacctcatagtgtggaaatatataagaCCTCTGGGCCTTTAAATAGCTGCACAGATCTGCAGGGTATGGAAAGCTCATATTTAACAAGATAACTCATTTAGTTATGAAAGCTAATTTAGTGGGTATGATGGTTTCATTTACttcttattgttttatttgttatttGCACTACACTTTATTTCTGAGCTGGGAATTACTTCATGATACTGCATCCTCATTCTGTTCAATCAGTATATTGTCTGCCTGCTTGGCTTTGTTATAtagtccaataataataataataatttattgaaAGCCATATTAAAAAAGAGAACATAAGCTCATTGGACACGTTGTGTATGTGCAGGTATTGTgtatggtttgtgtgtgtttgtgtgtgtatgtgtgtgtatgtgcgtgcgtgtgtgtTGGTGCGTGtgtgtgtgtgcgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU282717 True 4008 lncRNA 0.42 3 32932227 33025716

Neighbor

gene id symbol gene type direction distance location
LOC110518723 tmm74 coding downstream 171332 32757693 ~ 32760895 (-)
if36 if36 coding downstream 294103 32596856 ~ 32638124 (-)
LOC110518696 LOC106583742 coding downstream 337732 32513177 ~ 32594495 (-)
LOC110518458 NA coding downstream 472212 32299848 ~ 32460015 (-)
macf1b LOC106583729 coding downstream 635246 32254746 ~ 32296981 (-)
LOC110518858 LOC106583820 coding upstream 15957 33041673 ~ 33057433 (-)
LOC110518882 LOC106583857 coding upstream 252266 33277982 ~ 33284779 (-)
LOC118964365 NA coding upstream 260496 33286212 ~ 33286264 (-)
LOC110518895 LOC106583864 coding upstream 275399 33301115 ~ 33337241 (-)
ube3d ube3d coding upstream 357264 33382980 ~ 33401872 (-)
G247657 NA non-coding downstream 727 32931275 ~ 32931500 (-)
G247630 NA non-coding downstream 24299 32907722 ~ 32907928 (-)
G247628 NA non-coding downstream 24815 32907209 ~ 32907412 (-)
G247627 NA non-coding downstream 26690 32905331 ~ 32905537 (-)
G247626 NA non-coding downstream 27951 32904032 ~ 32904276 (-)
G247847 NA non-coding upstream 10484 33036200 ~ 33036500 (-)
G247855 NA non-coding upstream 21919 33047635 ~ 33048593 (-)
G247868 LOC106583830 non-coding upstream 40128 33065844 ~ 33067704 (-)
G247994 NA non-coding upstream 185764 33211480 ~ 33211791 (-)
G248152 NA non-coding upstream 221665 33247381 ~ 33247876 (-)
LOC110518371 LOC106583543 other downstream 1351025 31562384 ~ 31631107 (-)
G245366 LOC106605077 other downstream 1986384 30944953 ~ 30945843 (-)
G244393 LOC106583245 other downstream 2714638 30211570 ~ 30217682 (-)
G244381 LOC106583245 other downstream 2732457 30199232 ~ 30199770 (-)
G244379 NA other downstream 2754819 30174013 ~ 30177408 (-)
G248239 LOC106605043 other upstream 393713 33419429 ~ 33419707 (-)
G249485 LOC106584080 other upstream 1331559 34357275 ~ 34359451 (-)
G249978 NA other upstream 1863790 34889506 ~ 34889954 (-)
G249990 NA other upstream 1870242 34895958 ~ 34896296 (-)
G251462 LOC106584332 other upstream 3114396 36140112 ~ 36144572 (-)

Expression


Co-expression Network