G247993


Basic Information

Item Value
gene id G247993
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 33211567 ~ 33211936 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU282940
atgttcagcttccaggaattgtgtacagatccttgcaacatgttGCTGTGCATTAtcacgctgaaacatgaggtgatggcagtggatgaatggcacgacaatgggcctcaggatctagtcacggtatctctgtgcattcaaattgccatcgataaaatgcaaattgtgtttgttgtccgtagcttatgcctgcccataccataaccccaccgccaccatggggcactccgtTCACAATCAGCAaactgccatctgcccggtacagttgaaattgggattcatctgtgaagaacacacttctccagcgtgccagtggccattgaaggtgagcatttgaccagtcagtatgccaattgcatgctccctgttt

Function

NR:

description
Transposable element Tcb2 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU282940 True 370 lncRNA 0.48 1 33211567 33211936

Neighbor

gene id symbol gene type direction distance location
LOC110518871 LOC100194712 coding upstream 38852 33086509 ~ 33172715 (+)
LOC110518846 LOC106583830 coding upstream 142956 33057896 ~ 33068611 (+)
LOC110518767 NA coding upstream 176211 33019411 ~ 33035356 (+)
LOC110518743 eny2 coding upstream 358762 32850909 ~ 32852805 (+)
LOC110518733 LOC106583759 coding upstream 434158 32771075 ~ 32777409 (+)
tpbgb LOC106583879 coding downstream 129431 33341367 ~ 33344522 (+)
LOC110518918 LOC106583887 coding downstream 189914 33401850 ~ 33442397 (+)
snap91a LOC106583925 coding downstream 238505 33450441 ~ 33559250 (+)
me1 LOC106583951 coding downstream 320949 33532885 ~ 33653066 (+)
LOC110504028 LOC106604995 coding downstream 453621 33665557 ~ 33702310 (+)
G247986 NA non-coding upstream 4678 33206684 ~ 33206889 (+)
G247682 NA non-coding upstream 217550 32991994 ~ 32994017 (+)
G247681 NA non-coding upstream 217927 32978569 ~ 32993640 (+)
G247680 NA non-coding upstream 219119 32977545 ~ 32992448 (+)
G247580 NA non-coding upstream 319130 32892193 ~ 32892437 (+)
G248006 NA non-coding downstream 5173 33217109 ~ 33217352 (+)
G248007 NA non-coding downstream 5527 33217463 ~ 33217694 (+)
G248016 NA non-coding downstream 17768 33229704 ~ 33230060 (+)
G248028 NA non-coding downstream 32119 33244055 ~ 33244261 (+)
G248029 NA non-coding downstream 35416 33247352 ~ 33247797 (+)
G246282 NA other upstream 1352248 31852668 ~ 31859319 (+)
G245930 NA other upstream 1530927 31669958 ~ 31680640 (+)
G245799 NA other upstream 1586524 31492207 ~ 31641357 (+)
G244991 NA other upstream 2124312 31086769 ~ 31087255 (+)
G248134 NA other downstream 211853 33423789 ~ 33424103 (+)
G248750 LOC106583978 other downstream 616284 33828220 ~ 33835275 (+)
G248794 NA other downstream 762540 33974476 ~ 33977835 (+)
G248795 NA other downstream 794222 34006158 ~ 34013057 (+)
G249245 NA other downstream 1090636 34302572 ~ 34302907 (+)

Expression


Co-expression Network