G248120 (ube3d)


Basic Information

Item Value
gene id G248120
gene name ube3d
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 33394474 ~ 33395206 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU283070
TGTAGGCTGTCTTACTCCTGGTGTGTGCTGGCAGAGGGAGAACAGGGGAGATAGAGAACTTTGACGGCGCTGCCAGCCTCAGTGGGTGATTGATGCTCAGAACACTGGCGGTGGCCGGGAGAGGTGACAGCATCACCTCTGACAGTCAATGACGGAGTGGCAGAGAACGAGGCAATGAGGGAGTCGCTGTTCAGGAGCCAGAGcAATATGAAGGCTTTTCCATCTGAGGCCTGGATAGAGAAACGAAACACGCTCTGTGAGGAGGACAGCTCCACCAGTCTGGCAGCTATggtctgttccaggaacagtgaCCTGTCTGGAGAGGTATCAAACTGGCTGTCTCCCACACTGGGTCTCACCGTCACCTCTGTGATGTAGAGTTTCAAGGTCCC

Function

symbol description
ube3d Predicted to enable cyclin binding activity; ubiquitin conjugating enzyme binding activity; and ubiquitin protein ligase activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein ubiquitination. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytosol and nucleus. Orthologous to human UBE3D (ubiquitin protein ligase E3D).

NR:

description
E3 ubiquitin-protein ligase E3D isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU283070 True 392 lncRNA 0.55 3 33394474 33395206

Neighbor

gene id symbol gene type direction distance location
tpbgb LOC106583879 coding upstream 49952 33341367 ~ 33344522 (+)
LOC110518871 LOC100194712 coding upstream 221759 33086509 ~ 33172715 (+)
LOC110518846 LOC106583830 coding upstream 325863 33057896 ~ 33068611 (+)
LOC110518767 NA coding upstream 359118 33019411 ~ 33035356 (+)
LOC110518743 eny2 coding upstream 541669 32850909 ~ 32852805 (+)
LOC110518918 LOC106583887 coding downstream 6644 33401850 ~ 33442397 (+)
snap91a LOC106583925 coding downstream 55235 33450441 ~ 33559250 (+)
me1 LOC106583951 coding downstream 137679 33532885 ~ 33653066 (+)
LOC110504028 LOC106604995 coding downstream 270351 33665557 ~ 33702310 (+)
usp45 LOC106583983 coding downstream 451040 33846246 ~ 33894315 (+)
G248113 NA non-coding upstream 11776 33382466 ~ 33382698 (+)
G248112 NA non-coding upstream 12328 33381853 ~ 33382146 (+)
G248111 NA non-coding upstream 12738 33381518 ~ 33381736 (+)
G248090 NA non-coding upstream 41195 33353044 ~ 33353279 (+)
G248080 NA non-coding upstream 46581 33347554 ~ 33347893 (+)
G248130 NA non-coding downstream 22123 33417329 ~ 33417641 (+)
G248552 NA non-coding downstream 279822 33675028 ~ 33675236 (+)
G248619 NA non-coding downstream 337060 33732266 ~ 33732501 (+)
LOC110518733 LOC106583759 other upstream 618687 32771075 ~ 32777409 (+)
G246282 NA other upstream 1535155 31852668 ~ 31859319 (+)
G245930 NA other upstream 1713834 31669958 ~ 31680640 (+)
G245799 NA other upstream 1769431 31492207 ~ 31641357 (+)
G244991 NA other upstream 2307219 31086769 ~ 31087255 (+)
G248134 NA other downstream 28583 33423789 ~ 33424103 (+)
G248750 LOC106583978 other downstream 433014 33828220 ~ 33835275 (+)
G248794 NA other downstream 579270 33974476 ~ 33977835 (+)
G248795 NA other downstream 610952 34006158 ~ 34013057 (+)
G249245 NA other downstream 907366 34302572 ~ 34302907 (+)

Expression


Co-expression Network