G248733 (LOC106583971)


Basic Information

Item Value
gene id G248733
gene name LOC106583971
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 33816004 ~ 33818248 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU283746
TTTTTTCATTGTTCTGTATGGTTACATTACAGGGTCATTCTACAGTGTTCTTACCTTTCTCGTCGTGTGTTGGAGTGGCAGTGGTAGGGATGTCGTACCACTGAGCCAGAGTGTTGGAGTACCACACACTCAGCTCCTCGCCTGCTGGGATCTCCGTCAGCACACGATAGAAAATCTGCCCACTAGGTAGATCTGAGACAGCCTCCAAGTTCTGTTCTTGACTGTTTCTGGCCGCCCGGATACACCCAATCCAGTCTGGCACAGGGCAACCTGATTCATCCACGATTTCACCCCTCAGCAGCCGAATCTTTCTCTTGGTTACGACCTCTTTGCGATCAGTAACGTATTTCCCTAGTTTGAAGACGCCCGGCACCGGTCCTATCCGCAGGCCGGCGGGGATGCTGCAGTCTGCAAACACACTGATAGCGGATGCCCGAGTTGCTTGCATGGCTGGCTCTCCGTGCAGTGGTTTGAGAACCATGAAGACCACGCAGTGACTGATTGAGACAAGAAGGAGTCACAGAGATGAGGACAGGCCAATCTCCGCCCGCAAAGTGATGCGGTGGCGTATGTGATCAGGCTTTTCTAATGGAGCAGCAAGGTACCCCCTCGACACATTAACGCGCAAGGGCGAACAGTATGCGCGCGGTGTGAGAGAGTTTGGC
>TU283747
TTTTTTCATTGTTCTGTATGGTTACATTACAGGGTCATTCTACAGTGTTCTTACCTTTCTCGTCGTGTGTTGGAGTGGCAGTGGTAGGGATGTCGTACCACTGAGCCAGAGTGTTGGAGTACCACACACTCAGCTCCTCGCCTGCTGGGATCTCCGTCAGCACACGATAGAAAATCTGCCCACTAGGTAGATCTGAGACAGCCTCCAAGTTCTGTTCTTGACTGTTTCTGGCCGCCCGGATACACCCAATCCAGTCTGGCACAGGGCAACCTGATTCATCCACGATTTCACCCCTCAGCAGCCGAATCTAGATCCACAACATGGATGGTTCAACGTTAGAAATGATGGTACT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU283746 False 665 lncRNA 0.53 3 33816004 33818248
TU283747 True 352 lncRNA 0.49 2 33816004 33816451

Neighbor

gene id symbol gene type direction distance location
LOC110504028 LOC106604995 coding upstream 113694 33665557 ~ 33702310 (+)
me1 LOC106583951 coding upstream 162938 33532885 ~ 33653066 (+)
snap91a LOC106583925 coding upstream 308699 33450441 ~ 33559250 (+)
LOC110518918 LOC106583887 coding upstream 373607 33401850 ~ 33442397 (+)
tpbgb LOC106583879 coding upstream 471482 33341367 ~ 33344522 (+)
usp45 LOC106583983 coding downstream 27998 33846246 ~ 33894315 (+)
pnisr pnisr coding downstream 80626 33898874 ~ 33907094 (+)
coq3 LOC106605038 coding downstream 91533 33909781 ~ 33926457 (+)
LOC110519140 LOC106584034 coding downstream 108626 33926874 ~ 33954721 (+)
fbxl4 LOC106605030 coding downstream 201585 34019833 ~ 34041157 (+)
G248683 NA non-coding upstream 36433 33777845 ~ 33779571 (+)
G248682 NA non-coding upstream 40900 33774805 ~ 33775104 (+)
G248677 NA non-coding upstream 43233 33772380 ~ 33772771 (+)
G248674 NA non-coding upstream 45357 33770360 ~ 33770647 (+)
G248658 NA non-coding upstream 55148 33760607 ~ 33760856 (+)
G248750 LOC106583978 non-coding downstream 9972 33828220 ~ 33835275 (+)
G248754 NA non-coding downstream 20734 33838982 ~ 33840098 (+)
G248779 NA non-coding downstream 77937 33896185 ~ 33896449 (+)
G248781 NA non-coding downstream 78765 33897013 ~ 33897244 (+)
G248134 NA other upstream 391901 33423789 ~ 33424103 (+)
LOC110518733 LOC106583759 other upstream 1040217 32771075 ~ 32777409 (+)
G246282 NA other upstream 1956685 31852668 ~ 31859319 (+)
G245930 NA other upstream 2135364 31669958 ~ 31680640 (+)
G245799 NA other upstream 2190961 31492207 ~ 31641357 (+)
G248794 NA other downstream 156228 33974476 ~ 33977835 (+)
G248795 NA other downstream 187910 34006158 ~ 34013057 (+)
G249245 NA other downstream 484324 34302572 ~ 34302907 (+)
G249323 NA other downstream 601642 34419890 ~ 34420612 (+)

Expression


Co-expression Network