G248750 (LOC106583978)


Basic Information

Item Value
gene id G248750
gene name LOC106583978
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 33828220 ~ 33835275 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU283764
GAATTGAATGCAGAGAGCTTTATTTGCTGCTTGTTGAGTAGCTGTGTAAGGCACACAGAGTTTCTGAATATGTGGTTCAAAGGCACATCACAAGAGCTGAAGGGTACTGCTTGACTAGGTTGCAGGGTCATTCATGGTCTCATGTCTTGGTCAAAGGTCAGAGACCAGACATGAGCCGTCAGTGCAAAGCTCCAGGGGCGTGAGGGgttaaggggtgagaggaggTCACATGGTCATTTACGCCTATTCCTCGTCCGAGTCGTCGGCAGCGCCAGAGATTATGTAGGTTTGCTCCTCGTGGGAGTACTCCATGGAGGCGCCGTACCCATAATCACCTGCACCTTTTCCCATGCCTCCACCATTGCCTCCAGGACCCATGGCTCCAGCACCCATGCCTTTAGCACCATTGGCTACAGCACCAATTCCTCCACCATCCATACCTCCACCCATTCCTCCAGCTCCTAGGCCTCCAGCACCCACACCTCCAGCACCCACGCCTTTGGCCCCAATTCCTCCAGCTCCCATTCCTCCACCAATGCTTCCAGCTCCACCCCTGCCTCCATCTCAGCCCGCCTCCTCAGCTCAACTGCCTCCTCGTATTTGACTTTGGTTATCTCCAGTTGACCTGCCATGGCCTCTTTGCCAGCTAAGGCTTGGTCCTGCGCATTCTCATCTGATCTGCAATCTTCTTCAGATCTCTCAGCTGATCCTCATAGAGTTTGCGCAGGCCCGACGGCTTCACGAACCGGTTCTGGATGCCGTCAATCTCCATCTCCAACAACTTGTTCTGCTGCTCCAGGGACCGAACTTCTCAATGTAAACAGCAAGTCTGTCGTTCAATACGACCATCTCCTGCCGCTCACCACTGCGCGTGCTGAGGAATACTTTGTTCTCGGCAGCAGATGCGTCCAGGTCCACCGGGGCCCCGTTGCCATAGCCCACACATGCCAATGTTCCCACATTCCCGCTAAAACGACAGACAGTTCAACACTCACCGCTTGACCTGGAGATAACTGACATCACTTTGTTATTCTGTGAACGTCAAGACATAACGTCAACATTAAATGTTATTGCCACTTGCATGTCATATCAGAGCCACATGGTTGATCGATGGCTTGTCACAATCTTTTATTAATTTCCAGGTGCCACATTTGTTCCTACTCTGATGTCAGATGCAAAACAATGTTTTGGCTTGGCTGAAGACGTCTTTATCCATCCGCTAATACTGGACTAGTAAAggccagtgcactactttttgtgataaaaaaacaaaacaatacaatacaatacagtaatgGACATTGACATTAAGTAGTTTGTAAAGATGGTAAATTAATACTTCACAAAAagtggttgttttccatgttattttctatttGTTTGTGTATTTCCCATAACTTTACACCTTTTTATGTAAATGTTTGATGAATAGGGTTTTGTTCTTTAttgattccattagaatgacaattGCAGAGAAAGGGTCAGGGCAACAACTCTAACACTTCCAACTATTGAATCCTGCAAAATACTTTTCTTAATTAtacattttaaacattttattttatttttttaatttttttttacaaaccgTAATTTATAGATTTTTAAAAttcagatttttcagggggtgctgcagcacccacAAATCCCACAGCTATGGCCTACAGCTGTTACAAATTAAAATACTTCGTTTGAATAAAATGTATGTTGTTCTCATGGATGTGAGCTGTTTTGCTGTTTTTGAAATGTATTGAATTTAGTCTCTTCCAGTGTTTAGACCTAcctacttatttatttattgatcCTTAAAACCTAAAATTCACAATTAAATAAAGAGTTGTAAATTATTTAGATGCTAGTCCTGTAGGCTAATAGTTATGTGGAAAATTGACACAGGCCTTACTTTTTGACAACTAAAAGTTTCTCTATTCGTTTTAATCAACTGATGCCTTCGACTTGCATCAAAAATACATTCAGAAATAGGCTGGTGCTGCACAATAAGAAACAATTACAACTGTGGTTTgtataagagagggagaggtggtggATTATAAATTGTCTGTGGTTCCACTATCTAAGAGTTCATTTGCTTGATGGTGTTTTTAATTGCTTGATAACAATAAAGGTCGCCTATCAACTCTGAAAGACAGGCTTGTCTCCAGCGCAATTAGACGGGAAAATGTATTTCACAGAGTGAAGGAGAATTCGATGTGTTATGTCTTTCAGGAAGAAGTCTTTGAGTCATCTGCCAGTAAGGAGACAAAGTGGCTTATAGCCTCAGAAGAGCAGTAAGAGGAGGGGAGGTACATACACTGTTGACAGCAACATATCATCTATCTTGTACTGTAATAACTGCCTGTGTTTTGGTGGTAATGTAACAACTCGCTTTCTGTAAATTCACAAATAGAATACTTGTGGTGTATCAGCAGTGTGTAATCTCGCACTCTCTCTTTAAGATGTTACCTATATTTTATCAGCTGTATCTATATAACCTCTATTACCCACTACTATGCCAAACCGAACCATACTGTGCCTTACTGGGCTTGAACATTTGAGTAAAGCCACAGATTGGACAATGAATCAGATATTTCACAGGATGTGTAAATGTGTAGCATCCGGtcggcgtttccactcactaccaaatatggtgatgaaagggaaaggggaatacctagtcagttgtacaactgaatgccatcaactgaaatgtgtccacATTTAACCtagcccctctgaatcagagaggtgcgggggttctgccttaatcgacatccatgtctttggcacccggggaacagtgggttaaactgccttgctcagggttagaacgacagatttttaccttgtcagctcggggattggatccagcaacctttcggttactggcccgacgctctaaccacttttTTTTGACATTCTACAAATTTTCTCctcaatgaaacatttgatcttattgcagttttctgtttccaaaactagaacCTGTAACAAGTGGACCACGTTTTGTAGACTTTATCCTTTGGCCAAGTTTGTAAAAATGacattgtttagaaggagtgcatgGGCCAATTGAGTTACAGTATTGCACATAAGCACTTCAGAGAGTAGGCGTTCCctgaaatatgcaaataaatgctaAAAATGCACCagtaggatctcgctagctcatgcttgactctgcccacctccttgcttgttctgcccactatgattaatttgctcccattggaaacggcaggctctggtctatcttgggttagttataaagaTCTTTGGTATAGCCCTAGCAACTATGGTGGATGCagaaccaggccagctcagtacagctcAGTTTGGCTTAGTAATGTGAAAAGGCTATTAGTGTACTTGGTGTACAGGGTGGAGTGAGCATCTTACCCAGCCATGCGGGCGTTACGTGAGGTGGAGACGGTCCTTCTTCCCATGGTCTGGGCCTGCATACTGCTGGCTCCGGCACTGCGCGAGtagctggctgactggtggcgGTTAACTCTCCGGGTCGGGGATGGGCTGGACACCCTAACCTGGTAGGAGGATGAGCTGCCGCTGTCCTCAAAGTGGCGTCGGTAGGACGAAATCCTCTCAGGGCTGCGACTCATGTTGGCGGCTGCTCGGGTTTGCCTTTGTCTGCGTTCTCTGGAGGTGGTCAGTCTTCACCTATGGGACCTCTGCTGCTTTTGATGTGCACTAGCTCCATCGCCTGAGACTCTTTATAGTCCACACGGCCTGGCTTAGCCCAGCCCAAAGGCATGGCCGGCCCAACCCAACACATGAGCCAAGACCTCTGGAATCTCTAACCTCAGCACCACAGTGGGCCAGACCTGCCATGACATTCAGACATCTGCCAGCACCCTGCGAGGAGCTGAATTAGGGGCTATGGAACAGAAAGGCAGATAGAACAGAGGCAGCGCTAGCAGGGCCCATTAGG
>TU283767
GAATTGAATGCAGAGAGCTTTATTTGCTGCTTGTTGAGTAGCTGTGTAAGGCACACAGAGTTTCTGAATATGTGGTTCAAAGGCACATCACAAGAGCTGAAGGGTACTGCTTGACTAGGTTGCAGGGTCATTCATGGTCTCATGTCTTGGTCAAAGGTCAGAGACCAGACATGAGCCGTCAGTGCAAAGCTCCAGGGGCGTGAGGGgttaaggggtgagaggaggTCACATGGTCATTTACGCCTATTCCTCGTCCGAGTCGTCGGCAGCGCCAGAGATTATGTAGGTTTGCTCCTTTGTGTCGCTTTCCAGTGTTTCATCCTCCGATTTAACTGTTATGAGCACCGTCCTCCTCTCCGTCATCTCCACTGCCTGTTCCTCGTGGGAGTACTCCATGGAGGCGCCGTACCCATAATCACCTGCACCTTTTCCCATGCCTCCACCATTGCCTCCAGGACCCATGGCTCCAGCACCCATGCCTTTAGCACCATTGGCTACAGCACCAATTCCTCCACCATCCATACCTCCACCCATTCCTCCAGCTCCTAGGCCTCCAGCACCCACACCTCCAGCACCCACGCCTTTGGCCCCAATTCCTCCAGCTCCCATTCCTCCACCAATGCTTCCAGCTCCACCCCTGCCTCCTGCACCCATGCCTCCAGCTCCCATCCCTCCAGCACCCATTCCACCTAAGCTTCCAGCTCCAGGTCCAATGCCTCCAGCCATGCCCACACTCATCCCAGCACTCATGGAGCTTGAGCTGCTACTCATTATGGACATGGTCCCAACCATGGTTGTGAGTCGCAAGTCCTCACCCTCAATCAGCTTCTGTAAGTTGTGATCTCAATCTCCAGAGCCATCTTCATGTTCAGAAGGTCCTGGTATTCACGCAGGTGCAGAGCGATTTTAGACTTGGTGGATTTCAGTTCCTCCTTCAGGGCCTCAATTCTTGCCTGAAGGAATTCAATCTCCACCTCCAACTGCTCAAGCTGTTTCTCCAGGGCGATGCGCTGAGAGGTGGCTCTGTCCACATCCGACGGAATGCTTCGATCTCCATCTCAGCCCGCCTCCTCAGCTCAACTGCCTCCTCGTATTTGACTTTGGTTATCTCCAGTTGACCTGCCATGGCCTCTTTGCCAGCTAAGGCTTGGTCCGCTGCATTCTCATCTGATCTGCAATCTTCTTCAGATCTCTCAGCTGATCCTCATAGAGTTTGCGCAGGCCCGACGGCTTCACGAACCGGTTCTGGATGCCGTCAATCTCCATCTCCAACAACTTGTTCTGCTGCTCCAGGGACCGAACCTTTTAAGAGAATGACAATGGCAGGGTATAAATAATCATCAAATTCACCAGGGCCCCTCACTTGAATATGCTCGCTGCCCAAATACGTGGGAATAATGAGCGACTCCGTCTCCACAGCCAGAAGGCTGCATGCCTGTATGGCACACTCAAGCAAGCGTAGTCTAATTAGACAAATTCCATCAAATAAACATTGTTCCTCTACTTATGGGCGGCAGAATATCGCATAGATGTTAAAGAATATTGGCTGTGGCACTGAGGCAATGTATCCGGCCAGAACCCACACACAATAGCACATCCATGTGTGAAGAACAGCTATGTATAGGCTATGGCTTACTAGAAAGTTGGCTATCTCTAATATGAAAGGCACAAAAACAGCAAGTTCATCCCCATATGTTGTGTCAATTAGTCTGTGCGCCTTGTGTGTGAGCAAAGCGTGGTGAGTGCTTACCTTCTCAATGTAAACAGCAAGTCTGTCGTTCAATACGACCATCTCCTGCCGCTCACCACTGCGCGTGCTGAGGAATACTTTGTTCTCGGCAGCAGATGCGTCCAGGAGGATGAGCTGCCGCTGTCCTCAAAGTGGCGTCGGTAGGACGAAATCCTCTCAGGGCTGCGACTCATGTTGGCGGCTGCTCGGGTTTGCCTTTGTCTGCGTTCTCTGGAGGTGGTCAGTCTTCACCTATGGGACCTCTGCTGCTTTTGATGTGCACTAGCTCCATCGCCTGAGACTCTTTATAGTCCACACGGCCTGGCTTAGCCCAGCCCAAAGGCATGGCCGGCCCAACCCAACACATGAGCCAAGACCTCTGGAATCTCTAACCTCAGCACCACAGTGGGCCAGACCTGCCATGACATTCAGACATCTGCCAGCACCCTGCGAGGAGCTGAATTAGGGGCTATGGAACAGAAAGGCAGATAGAACAGAGGCAGCGCTAGCAGGGCCCATTAGG
>TU283768
GAATTGAATGCAGAGAGCTTTATTTGCTGCTTGTTGAGTAGCTGTGTAAGGCACACAGAGTTTCTGAATATGTGGTTCAAAGGCACATCACAAGAGCTGAAGGGTACTGCTTGACTAGGTTGCAGGGTCATTCATGGTCTCATGTCTTGGTCAAAGGTCAGAGACCAGACATGAGCCGTCAGTGCAAAGCTCCAGGGGCGTGAGGGgttaaggggtgagaggaggTCACATGGTCATTTACGCCTATTCCTCGTCCGAGTCGTCGGCAGCGCCAGAGATTATGTAGGTTTGCTCCTTTGTGTCGCTTTCCAGTGTTTCATCCTCCGATTTAACTGTTATGAGCACCGTCCTCCTCTCCGTCATCTCCACTGCCTGTTCCTCGTGGGAGTACTCCATGGAGGCGCCGTACCCATAATCACCTGCACCTTTTCCCATGCCTCCACCATTGCCTCCAGGACCCATGGCTCCAGCACCCATGCCTTTAGCACCATTGGCTACAGCACCAATTCCTCCACCATCCATACCTCCACCCATTCCTCCAGCTCCTAGGCCTCCAGCACCCACACCTCCAGCACCCACGCCTTTGGCCCCAATTCCTCCAGCTCCCATTCCTCCACCAATGCTTCCAGCTCCACCCCTGCCTCCTGCACCCATGCCTCCAGCTCCCATCCCTCCAGCACCCATTCCACCTAAGCTTCCAGCGCCACCCATTCCTCCACCCATTCCTCCACCACTGCCTCCAGGTCCAATGCCTCCAGCCATGCCCACACTCATCCCAGCACTCATGGAGCTTGAGCTGCTACTCATTATGGACATGGTCCCAACCATGGTTGTGAGTCGGATCAGAATCAAGAATATATGACATTACCACAAATTTGCTCTTCTAAAGGTTATTTACATGCTCTGTATGATCCTATCTAAATCCATTGCACTAAACCTCACCTGTAAGTTGTGATCTCAATCTCCAGAGCCATCTTCATGTTCAGAAGGTCCTGGTATTCACGCAGGTGCAGAGCGATTTTAGACTTGGTGGATTTCAGTTCCTCCTTCAGGGCCTCAATTCTTGTACTTTTCCTGTGCTTCACGAATTTGTGCCTCCAGAGCCTCATTCTTGGTCTTCAAAGCTTCCAGGCCACGCTCTTTGTTTAGACATCCTTCTTGGCGCCAGCAACTTCTTCCCTGACACTTCGAACTATATCCACATGTTTCGTCGTCTTGTTGTTCAGGTCTTCAAATTTACTTTTATACCAGGAATCCATTTCCTAAAATTTTTTGCCGCAATTTCGTCATACTGAGCTTGGATTTGTTTGAGAGCGCCTGAGATGTCGGGGAGGTCATAAGCGCTCTGGGCTGAGGAGTGGGCAGCATATATCATTTTCAGTAGCTCTTCAATTTCCTGAGAAAGAAAAAAGGTTCAATTAAATGGTTAAAGgggacggtaggtagcctagtggttagatcattggactagtaaccgaaaggttgctagatcaaatccccgagctgacaaggtaaaaatctgttgttctgcctctgaacaaggcagttaacccactgttcctaggccgtcattgtaaataagaatttgttcttaactgacttgcctcgttaaataaaaaagATGATGTAGGCCTACACAGTAAAATCGCAAGAGTTAATTAAACTCTTTACAGATTGGATTTGTttagaaaaaaaatgtgtgtttattatcaatgtacatgcaaaaacacatattgaaacaatataaaaaataaaaaaaactgcctGCAACAGAGCATGTTGGGAAATATGACAATGAGGCCCCTCCCACATCTGTGGAAAACTCCATAGATTTAACTCCCTTTCTCTGGTTACTCTTAATGGAGTTAAAAGTACTCCATCCCAATAAACTCCAGTTATCGACACAGGAAGCATATCACTCTCTTGAGGGTTAAGATAACTCCTAAGAGtaaatttaccccccccccccccccctccttgatTTACTGTTTATCATTTTGTCCATTAGCTAGAGTTGGTATAGTTCGGTCCAAATCAATCAGTGCGCGCTATAATGCGACCTACCGCTTTGTGCACCCTCTGAAGGAATTCAATCTCCACCTCCAACTGCTCAAGCTGTTTCTCCAGGGCGATGCGCTGAGAGGTGGCTCTGTCCACATCCGACGGAATGCTTCGATCTCCATCTCAGCCCGCCTCCTCAGCTCAACTGCCTCCTCGTATTTGACTTTGGTTATCTCCAGTTGACCTGCCATGGCCTCTTTGCCAGCTAAGGCTTGGTCCGCTGCATTCTCATCTGATCTGCAATCTTCTTCAGATCTCTCAGCTGATCCTCATAGAGTTTGCGCAGGCCCGACGGCTTCACGAACCGGTTCTGGATGCCGTCAATCTCCATCTCCAACAACTTGTTCTGCTGCTCCAGGGACCGAACCTTTTAATGTAAACAGCAAGTCTGTCGTTCAATACGACCATCTCCTGCCGCTCACCACTGCGCGTGCTGAGGAATACTTTGTTCTCGGCAGCAGATGCGTCCAGGTCCACCGGGGCCCCGTTGCCATAGCCCACACATGCCAATGTTCCCACATTCCCGCAGCCATGCGGGCGTTACGTGAGGTGGAGACGGTCCTTCTTCCCATGGTCTGGGCCTGCATACTGCTGGCTCCGGCACTGCGCGAGtagctggctgactggtggcgGTTAACTCTCCGGGTCGGGGATGGGCTGGACACCCTAACCTGGTAGGAGGATGAGCTGCCGCTGTCCTCAAAGTGGCGTCGGTAGGACGAAATCCTCTCAGGGCTGCGACTCATGTTGGCGGCTGCTCGGGTTTGCCTTTGTCTGCGTTCTCTGGAGGTGGTCAGTCTTCACCTATGGGACCTCTGCTGCTTTTGATGTGCACTAGCTCCATCGCCTGAGACTCTTTATAGTCCACACGGCCTGGCTTAGCCCAGCCCAAAGGCATGGCCGGCCCAACCCAACACATGAGCCAAGACCTCTGGAATCTCTAACCTCAGCACCACAGTGGGCCAGACCTGCCATGACATTCAGACATCTGCCAGCACCCTGCGAGGAGCTGAATTAGGGGCTATGGAACAGAAAGGCAGATAGAACAGAGGCAGCGCTAGCAGGGCCCATTAGG

Function

NR:

description
PREDICTED: glial fibrillary acidic protein-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU283764 False 3946 lncRNA 0.45 5 33828220 33835275
TU283767 False 2252 TUCP 0.52 8 33828220 33835275
TU283768 True 3136 TUCP 0.50 10 33828220 33835275

Neighbor

gene id symbol gene type direction distance location
LOC110504028 LOC106604995 coding upstream 125910 33665557 ~ 33702310 (+)
me1 LOC106583951 coding upstream 175154 33532885 ~ 33653066 (+)
snap91a LOC106583925 coding upstream 320915 33450441 ~ 33559250 (+)
LOC110518918 LOC106583887 coding upstream 385823 33401850 ~ 33442397 (+)
tpbgb LOC106583879 coding upstream 483698 33341367 ~ 33344522 (+)
usp45 LOC106583983 coding downstream 10971 33846246 ~ 33894315 (+)
pnisr pnisr coding downstream 63599 33898874 ~ 33907094 (+)
coq3 LOC106605038 coding downstream 74506 33909781 ~ 33926457 (+)
LOC110519140 LOC106584034 coding downstream 91599 33926874 ~ 33954721 (+)
fbxl4 LOC106605030 coding downstream 184558 34019833 ~ 34041157 (+)
G248733 LOC106583971 non-coding upstream 9972 33816004 ~ 33818248 (+)
G248683 NA non-coding upstream 48649 33777845 ~ 33779571 (+)
G248682 NA non-coding upstream 53116 33774805 ~ 33775104 (+)
G248677 NA non-coding upstream 55449 33772380 ~ 33772771 (+)
G248674 NA non-coding upstream 57573 33770360 ~ 33770647 (+)
G248754 NA non-coding downstream 3707 33838982 ~ 33840098 (+)
G248779 NA non-coding downstream 60910 33896185 ~ 33896449 (+)
G248781 NA non-coding downstream 61738 33897013 ~ 33897244 (+)
G248810 NA non-coding downstream 120283 33955558 ~ 33957622 (+)
G248134 NA other upstream 404117 33423789 ~ 33424103 (+)
LOC110518733 LOC106583759 other upstream 1052433 32771075 ~ 32777409 (+)
G246282 NA other upstream 1968901 31852668 ~ 31859319 (+)
G245930 NA other upstream 2147580 31669958 ~ 31680640 (+)
G245799 NA other upstream 2203177 31492207 ~ 31641357 (+)
G248794 NA other downstream 139201 33974476 ~ 33977835 (+)
G248795 NA other downstream 170883 34006158 ~ 34013057 (+)
G249245 NA other downstream 467297 34302572 ~ 34302907 (+)
G249323 NA other downstream 584615 34419890 ~ 34420612 (+)
rab42b rab42 other downstream 1318427 35153546 ~ 35173463 (+)

Expression


Co-expression Network